BAC Information

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BAC

Clone NameMSMg01-265P15
Chromosome11 (Build37)
Map Location 121,066,120 - 121,066,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
Downstream geneHexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265P15.T7 (MSMg01no265_p15.b1)MSMg01-265P15.TJ (MSMg01no265_p15.g1)
ACCAG407088AG407089
length723815
length of high quality
(start - end)
312 (45 - 356)222 (78 - 299)
definitionCHROMAT_FILE: MSMg01no265_p15.b1 PHD_FILE: MSMg01no265_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:38 2005CHROMAT_FILE: MSMg01no265_p15.g1 PHD_FILE: MSMg01no265_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGAGATCCACCTGCTTCTGCCTCCTGAGTGCTGGGATTAAACAC
ATGTACCACTGTGCCTGGCTAAATTAAATATATATATATATATTTTTTTT
TTTGCTTTTATGATAATCTTTTTTTTTCCATTTTTTATTAGGTATTTAAC
TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCATCCACCC
CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGT
ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT
GGCCGACTATTTTTCTTTCGCCCCCCCGCCGCTAGAGTCAAGAGCTCCGG
GGTACTGGTTACCCCATAATGTTGAACCACCTATAGGGTTGCAGATCCCT
TTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATC
GATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGG
CATAGTCTCACAAGAGACAGCTACATCTGCGTCCTTTCAATAAAATCTTG
CTAGTGTATGCCATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATC
CCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCTTCTCAGCTCCAAA
CTCCGTCTCTGTAACTCCTTCCA
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTTCTCCCGTAGCTGGGCTG
CGGCGGCGGCGACGCGGGTGAGTCCAGCCCACAGCCACCGATTGTGCTGG
GCCCGGATGACCTGTCTCCTACGGCCGCCGCCCTCTCCTTTCCCCAGCCC
CGAGAGCTGCATTGAGAAGCCTGTCAGGGACTTTGAACTGCCTGAGAGTG
GCAGGTCGGGCAGGGTTGGGGATTGAGGGCGAGTGTAGGGGGGGTGTGNN
TNTNTTNNNTTTNNTTTTTTTTTTTTTTNNNNNNNCTTCTTNCCNNANCA
AANNNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCTTATATTTAT
TATTATTTTNTATTTTTTCTCCCCCCCCTTTAAAAAAAAAAAAAATTTTT
GCGGGGGGGGGGGCCTTTTTTCTTCTTCTTCTCTTTCTTTTCTCTCTCCT
CTTACATTCTCTTTCCTTTCTACTCCTATCATAAATTACTTACGTCTCTT
TTCTTCTCTATCTTCTTTTCCTTTTTATACCTTCTCTTTTTCTTTACTAT
ATAATCCACTAATAAATCTATTTTCTTAACTAATTTTATCTCTTAATCTT
TGTGCACTTATCTCCTATTATTTATCTCTGATCATTTTTTTCATCTGTCT
ATAACAAAACATAAATATATTTTCTATTTTTTGTCTTTTTTTTTATGCCT
ATCACATATTTTCCTCAACTACTGCCCTCTTCCCCATTTTTTTTATTATG
ATTCCTCCTCACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_p15.g1 MSMg01no265_p15.g1 CHROMAT_FILE:
MSMg01no265_p15.g1 PHD_FILE: MSMg01no265_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:38 2005
         (222 letters)



>mm_chr11_121065920_121066538
          Length = 619

 Score =  381 bits (197), Expect = e-110
 Identities = 214/221 (96%), Gaps = 3/221 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcttctcccgtagctgggctgcggcggcggcgacgcgggtgagtccagcccacagcca 60
           |||||||||| |||||||||||   |||||||||||||||||||||| ||||||||||||
Sbjct: 201 tgtcttctcctgtagctgggct---gcggcggcgacgcgggtgagtcaagcccacagcca 257

                                                                       
Query: 61  ccgattgtgctgggcccggatgacctgtctcctacggccgccgccctctcctttccccag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 258 ccgattgtgctgggcccggatgacctgtctcctacggccgccgccctctcctttccccgg 317

                                                                       
Query: 121 ccccgagagctgcattgagaagcctgtcagggactttgaactgcctgagagtggcaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccccgagagctgcattgagaagcctgtcagggactttgaactgcctgagagtggcaggtc 377

                                                    
Query: 181 gggcagggttggggattgagggcgagtgtagggggggtgtg 221
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 378 gggcagggttggggattgagggcgagcgtagggggggtgtg 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 619
Length adjustment: 9
Effective length of query: 213
Effective length of database: 610
Effective search space:   129930
Effective search space used:   129930
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)