Query= MSMg01no266_m22.b1 MSMg01no266_m22.b1 CHROMAT_FILE:
MSMg01no266_m22.b1 PHD_FILE: MSMg01no266_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:41 2005
(323 letters)
>mm_chr11_83033398_83034120
Length = 723
Score = 296 bits (153), Expect = 1e-84
Identities = 279/321 (86%), Gaps = 8/321 (2%)
Strand = Plus / Plus
Query: 5 gaattcttattgttttttcaggataagt-ttttctggctttggggttttagttgttttga 63
|||||||||||| ||| |||||||| | ||| | ||||||| ||||| | ||||||||
Sbjct: 205 gaattcttattgggtttccaggataa-tatttccaggctttgcggtttaaaatgttttga 263
Query: 64 ag-ctttgcgattgtggtcctcagagttatggcctagacctttgaagaccaaggaagtga 122
| | ||| ||||||| | ||||| || |||| ||||||||||||||||||||||||||
Sbjct: 264 tgac-ttgggattgtgattttcagaattgtggcttagacctttgaagaccaaggaagtga 322
Query: 123 gaagacacattatcatagctgcatgagcacctcgtgacacctgtcacagtagctggacta 182
||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||
Sbjct: 323 gaagacacattatcacagctgcatgagcacctattgacacttgtcacagtagctggtcta 382
Query: 183 ga-gatcaccct-accattctgcctccacacaacagccactggggctgagacacattaga 240
| || || ||| |||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct: 383 aagga-ca-cctaaccattcttccttcacacaacagccactggggctgagacacgttaga 440
Query: 241 aacacttgtttcatggaggtgacatcagtgtgaagtcgtgatagtagtgggacacatcat 300
||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||||
Sbjct: 441 aacacttgtttcatggaggtgacatcagtgtgaagtcatgacagttgtggggtacatcat 500
Query: 301 gtacgacctaggaagttgttg 321
| | || ||||||||||||||
Sbjct: 501 ggatgaactaggaagttgttg 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no266_m22.g1 MSMg01no266_m22.g1 CHROMAT_FILE:
MSMg01no266_m22.g1 PHD_FILE: MSMg01no266_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:41 2005
(291 letters)
>mm_chr11_83191460_83192150
Length = 691
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Minus
Query: 1 cttatcctttgctccgggtcttagcatgggctctgcccccaggaacaacagtctcacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 438 cttatcctttgctccgggtcttagcatgggctctgcccccaggaacaaccgtctcacaag 379
Query: 61 gagcttcctcattgcttgagcttggtgttctgagaactgagctctatgttcagcaacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagcttcctcattgcttgagcttggtgttctgagaactgagctctatgttcagcaacaac 319
Query: 121 tgtctccccacactgctggcagatttctaatctagtagagtgtctggactcatgaggata 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tctctccccacactgctggcagatttctaatctagtagagtgtctggactcatgaggata 259
Query: 181 tagcgttactacctattgctcacatgcagtcattcatggggcaaacggctgtaacacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagcgttactacctattgctcacatgcagtcattcatggggcaaacggctgtaacacatg 199
Query: 241 tgctgcttgggttttgtcaatctgacacaaacctagacatatctgagaaga 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tgctgcttgggttttgtcaatctgacacaaacctagacatatctgagaaga 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
