BAC Information

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BAC

Clone NameMSMg01-267J24
Chromosome11 (Build37)
Map Location 71,013,847 - 71,014,117
singlet/doubletsinglet
Overlap geneNlrp1b
Upstream geneSlc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a
Downstream geneNlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267J24.T7 (MSMg01no267_j24.b1)MSMg01-267J24.TJ (MSMg01no267_j24.g1)
ACCAG408290AG408291
length760743
length of high quality
(start - end)		321 (46 - 366)303 (441 - 743)
definitionCHROMAT_FILE: MSMg01no267_j24.b1 PHD_FILE: MSMg01no267_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:44 2005CHROMAT_FILE: MSMg01no267_j24.g1 PHD_FILE: MSMg01no267_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCACCCTAACCCATGAGCCTGATACAGGGAAAAGGAGGTGAAAAA
AAAGTCACCAATTCCTGAGTAGGAAACTCACCAATTCCTGAGCTTCCTTC
CCACAAACACCCACCAATCTCTGAGCATAAAACTCCACCAATCCCTGAAC
AGGAAAACTCACAAATCCCACAGCTCCGCACATGCAGGACTTGAAATCCC
ATCAATCTTCAATCTGGAAATCTCTGCCCTAAAAAGATCTACCCCTCAGA
AATCTTATGTAAACCCTGTCTATAGTCCAATTCCTTGCTGTCCACTCATG
GAGCAGAGGGCAGCCTTCNCTGGATTTCCNNCCCCACACTCTGAACCTCC
AATAAATGTCTTTTATGGGACTCTCTGTCTGAAAAAACACAACTGGTTGG
AAGAAGCCAAGAAGCAATGAAGAGAAAAAGAGAAGAAGTAAAGAGAAGGA
GCAGGACTGAGGCCCCTGAGATCTTAAGCTCAGCTGGGGAGACTCTCCCC
TTGGAGCTGCAATGCCTCTGCTGAGGACGCTTCTTCTCAGAGCTGGGTGG
TTCCTAAACTTCCATTTCTCAGGGTACTCTTACATTGGAATACCTTTTCC
CCTCAGAACTGTATGATTCCTGGGCTCCAAGTCCCAGAGTACGCTTCCAT
CTGAGTAGAAACAGTACACCTTAAGGTATATAATTTGTAAGGAGTACTCG
ATAATCACCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAGAACACTCTGTTCTACAGAAGTG
CATGCTCAGGTTCCCATGTGATGCTCCAAGCCCCTTGGAAGGAGCACCCT
GAAGCTGTAATGGGGAGAGTCAGGCAGAAGGTCTCTGAGAAGGTTGGTAT
AGGGTTTGTTTAGGCCAGCTCTTGAGAAGAACAGTTAGTGACACCAATAT
TACAAGTCCAGACTTTAGACCTTCAACCCTCCTGAATGTATCCATCTGGG
AAGGGGGGAAAGACGAACAGCTGTCTCCTTAGGCTGTAGCAGTTGAGAGA
TAATCCATGCCAAATANNATCATTCTACCCCCCCCCCCTGCTCAATAATT
AGAAGTACAAGCCCATGCTATTACTGCTGTTATTATAGAATACAACCCTA
GGGGACAGAATATCAGAGCCACACATAGGGGCGATGAGGCTCAGAAAGGA
ATAGAGACTCACACAGAGGACCAGGGTAGACCCAGGAGAGGTGTGTGAAC
TTCACGGCCCCAGAGCAGGATCATTTCATAGCAGCACCTGTGAATACCTC
ATTGTTCCCAATGTGACCATGGAGAAGGGTATGAGGGCAAGCATGAAGGA
CCTCAGAAGTTCTCCCCGCCTCCTACCCCTGCCTCTGTGACCAACATACA
ACCACTGTCTCCTTTCCATAGGACATTCTTCCTCACTACTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_j24.g1 MSMg01no267_j24.g1 CHROMAT_FILE:
MSMg01no267_j24.g1 PHD_FILE: MSMg01no267_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:44 2005
         (303 letters)



>mm_chr11_71013597_71014296
          Length = 700

 Score =  238 bits (123), Expect = 3e-67
 Identities = 238/277 (85%), Gaps = 9/277 (3%)
 Strand = Plus / Minus

                                                                       
Query: 29  ccacacat-aggg-gcgatgaggctcagaaaggaatagagactcacacagaggaccaggg 86
           |||||||| |||| ||  ||||  ||||||||||||||||||||||||||||||||||  
Sbjct: 521 ccacacatgagggagc--tgagattcagaaaggaatagagactcacacagaggaccagac 464

                                                                       
Query: 87  tagacccaggagaggtgtgtgaacttcacggccccagagcaggatca-tttcatagcagc 145
           |||||| ||||| ||| ||||||||||| || |||| || |||| |  ||||| ||||||
Sbjct: 463 tagacctaggaggggtatgtgaacttcatggtcccaaagaagga-ctgtttcacagcagc 405

                                                                       
Query: 146 acctgtgaatacctcattgttcccaatgtgaccatggagaagggtatgagggcaagcatg 205
           |  | ||||||||||||||| |||| |||| ||||||||||||||||||||| |||||||
Sbjct: 404 atttatgaatacctcattgtcccca-tgtgtccatggagaagggtatgagggtaagcatg 346

                                                                       
Query: 206 aaggacctcagaagttctccccgcctcctacccctgcctctgtgaccaacatacaaccac 265
           ||||||| ||| |||| || |  |||| ||||| ||||||| ||||||||| ||||||||
Sbjct: 345 aaggaccccagcagttatcaca-cctc-tacccttgcctctctgaccaacacacaaccac 288

                                                
Query: 266 tgtctcctttccataggacattcttcctcactactca 302
           ||||||||| ||||||||| |||||||||| ||||||
Sbjct: 287 tgtctccttcccataggacgttcttcctcattactca 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 700
Length adjustment: 9
Effective length of query: 294
Effective length of database: 691
Effective search space:   203154
Effective search space used:   203154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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