BAC Information

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BAC

Clone NameMSMg01-267N07
Chromosome11 (Build37)
Map Location 89,988,625 - 89,988,938
singlet/doubletsinglet
Overlap genenone
Upstream geneNog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp, Tmem100
Downstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267N07.T7 (MSMg01no267_n07.b1)MSMg01-267N07.TJ (MSMg01no267_n07.g1)
ACCAG408443AG408444
length754692
length of high quality
(start - end)
317 (46 - 362)195 (101 - 295)
definitionCHROMAT_FILE: MSMg01no267_n07.b1 PHD_FILE: MSMg01no267_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:59 2005CHROMAT_FILE: MSMg01no267_n07.g1 PHD_FILE: MSMg01no267_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTCTTCTCTTCTTCTCTTCTCAACACAAGAGACAAAGGCCAA
AGCCGGCAAGGAGAACATGTTGGGTTCCTTCTCCAATGTGGAATTAAGCC
ATTGCCAAGCCAGCAAAACAGATACCAGAAATACTAAAGTCAACACACTG
AGGTCTGGAGGACAGGTTTAACCCTCACACACACAAAGCACCCTGAGGAT
GGCGGTTAAAAGAAACAATTTATTGGTGAGGCTCTAGAGATTATGGTCTC
ATGGAGTTTTGTCTCTAGTAGGTGTTATGTATTTGCTATGTGGAAAGCAT
TGTTCCAGTATTCAATTTATCCAGANTCGAGGTCTCTGATCTCTCAAGTT
ATNTGAAAGTGTGTGGACGCGAAGAAGTGAGTGAAAAAGATTGTGTGTGT
GTTATGCATATATGTGTGAATGCATGTAGAGACCACATGCATATATGTGT
GCCCGCCCGCGGACACCATATGCCATCCTTGTGCGTTATGCCTTTGGAAT
CTTCCATACCTTCCTTCCTTCCAATTTTCTTTCTCCTTCCTCAAAATTTC
CTTATTTTGATTCAGTCTCCCTATTTACACTACGCATTTTTTTCATAAAA
TCATACCGTTTCATTAATTCTCCCTCTTTCCCTCCTCACTTTGTCTTCTA
TACCGCCTGTTCTTATTATTGTATACACCTCCATTATTTCTTTTTCTCCC
CCAN
TGGCGGCCGCCTGGTTTCGAACCGAGGNGAACNANAGAATTTTCAAAACT
TCTGAGGATTTTCAGAGGGNCATAAATGGTATGGTCCCGATAATTACCCC
GGGTTACTGGTTGGTTGCTGTTGGTTGTTGGTCATGGTTTGTTAAGTAAT
CAAGTGCAAAGAAGTAACAACAAGAAGAAGAAACTAAATATCCTGCTGAT
GAAGATCAAACTTGCCTCACGGAACTTGTTTCCCCTAATCAACAGGAAGT
AGTCTTAACAATAATGTCACCCCTTTTCTTTCCATCCTTTTCCTTTTTTA
TTTGNGNNAAGGGGNTGAAAGGANAGAAAAGAATGTTTTTTTTTTCCCNN
NCCAAACCCCCCAAGACAAGGTANAGGGGAGGNGGNAAAGAACTGATCAC
AAAGAAAAAAAAGTTCTGAAGGAGGTGAGGAGTATCAACCATTCTGGCAG
GAAAGGCCAGATCTATGAATCAGATCTGGAAGTGTATGGATAGAAAAGCC
TAAGACAGAAAACTTGGCTCCCAAAACATTTTCTAATGTCTATGAGCCAG
GCGACCCTGGATGAACCATCTTACATATCTGAGTTTTAGATCTTTACTTT
GTGTACGTTTTGGGAGGGAGGAGGTTTATTTGTTTGTGTATCAAGAAATT
ACTGCTCAGGGAACGGAAAGATGACTCCTTAGATTATTGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_n07.b1 MSMg01no267_n07.b1 CHROMAT_FILE:
MSMg01no267_n07.b1 PHD_FILE: MSMg01no267_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:59 2005
         (317 letters)



>mm_chr11_89988421_89989138
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttctcttctcttcttctcttctc-aacacaagagacaaaggccaaagccggca 63
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 518 gaattccttctcttctcttcttctcttctcaaacacaagagacaaaggccaaagccggca 459

                                                                       
Query: 64  aggagaacatgttgggttccttctccaatgtggaattaagccattgccaagccagcaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggagaacatgttgggttccttctccaatgtggaattaagccattgccaagccagcaaaa 399

                                                                       
Query: 124 cagataccagaaatactaaagtcaacacactgaggtctggaggacaggtttaaccctcac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cagataccagaaatactaaagtcaacacactgaggtctggaggacaggtttaaccctcac 339

                                                                       
Query: 184 acacacaaagcaccctgaggatggcggttaaaagaaacaatttattggtgaggctctaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acacacaaagcaccctgaggatggcggttaaaagaaacaatttattggtgaggctctaga 279

                                                                       
Query: 244 gattatggtctcatggagttttgtctctagtaggtgttatgtatttgctatgtggaaagc 303
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 278 gattatggtctcatggagttttgtctctagtaggtgcaatgtatttgctatgtggaaagc 219

                         
Query: 304 attgttccagtatt 317
           ||||||||||||||
Sbjct: 218 attgttccagtatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)