BAC Information

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BAC

Clone NameMSMg01-270O02
Chromosome11 (Build37)
Map Location 46,237,619 - 46,409,029
singlet/doubletdoublet
Overlap geneCrsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491
Downstream geneDppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270O02.T7 (MSMg01no270_o02.b1)MSMg01-270O02.TJ (MSMg01no270_o02.g1)
ACCAG410592AG410593
length733742
length of high quality
(start - end)		695 (39 - 733)668 (75 - 742)
definitionCHROMAT_FILE: MSMg01no270_o02.b1 PHD_FILE: MSMg01no270_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:38 2005CHROMAT_FILE: MSMg01no270_o02.g1 PHD_FILE: MSMg01no270_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:39 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(46,408,339 - 46,409,029)(46,237,619 - 46,238,286)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACACATGGCTGTTCCCTGACCTTGTATACACACACAGAAGCCTACTGTGT
GCATGAATCTGTGTGCACACACAGACACCTACTGTGTGCATGAATCTGTG
CCTTGACTCTCCCAGTAGTACTGTGATCCAACATTCTATAATAGGATGAT
TAATAAGGCTCATGCCTTACGTGATGGATACATCACATTTATTTGCTGAC
TTTCACACTGGTAGACATTTAGAATGCTGTCAAATACGTACTGTTACAAA
CCACACTGCTATGACCATCCCTGCATCTCTTTTCTGCCACCTGTGACATA
CCCATGTCATTACTGCTCAGCTGTGTACTGAACTTGCACATAAAACTCTT
CAGTCAAAAGCTAAAGGTAACCGGGCTGCTCTGGGAAGACTGTTTGCACA
TGTTGGTTCTGTAATAGACTTTTACATCAGCATCCCCTGCAGACTGGACT
CATTCCCTTATACTAAAGGTCACCACAGAACCTTCTCAAACTCTCTGGCC
CTGTTGCTGACTGAGCTGTGGTAGCAGAAGGCTCCAGTGCTCACGGTGAG
GAGTTTAAGACCTGTCTGCTCCAGGCCTCAGTGAAGGTCTCTGCAGTTTT
CACTGTTTCTTCCAACAGTGACATCAACCATCCTCCTTAGGCTAAAATTC
CTGCCATACACGTAGCAGCCTTATCTTCCTGGA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTACATAGGCACAGAAAAAAAAAAT
CACACAACCACATTAATCATTGACAAAGAGTAAATGACAGAATTCAACAG
CTGTTCATGACGAACTCTCATATAACAGAAACAGAGCTTCAATATGAAAC
AGCACAAAACCCCTTGAGCTAACACTGTACTTAGTGATGAAGGCCCATGT
TTCTCTATAATCAAAGCCGAGTAAGAATGTCTGCATTCCCTCAGTAGAGT
GCCTGGAGCTGTGGACAGTGCCCTAGGCAAAAACACAGCATCATCAGATG
GAGAAAACCTGAGTGCTATATAGGTACTCCCTAGGTATTCACAATGAAGT
TCCAAGAACAGAGATGCATGAATTCACCAAGTTCACAGAATACAAAATAC
AAGTATTTACATGTGAATCTAAAATACTGTACACAGCTCCAAGGGAAAAA
ATCTAGAAGTCTAAGCCAGTGGAGAGAGATATCCAGGTCATGAATTCAAA
GTTTTAGTATTTCTGTCTTTCCCAAAGTATTTTATAGGTGTGGCATGCTA
TCAATTAAAACCCTAACAAGATATTTTTGCACACACAAAATTACATAAAA
TTTATCCACATGAGAAATAAATACAACCACTCAGAAAAACCATAAAAAAT
AACTAAGCAGTAGGGATAAGCCTATCCAATTTCAAGACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_o02.b1 MSMg01no270_o02.b1 CHROMAT_FILE:
MSMg01no270_o02.b1 PHD_FILE: MSMg01no270_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:38 2005
         (695 letters)



>mm_chr11_46408135_46409229
          Length = 1095

 Score = 1305 bits (675), Expect = 0.0
 Identities = 687/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacacatggctgttccctgaccttgtatacacacacagaagcctactgtgtgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gaattctcacacatggctgttccctgaccttgtatacacacacagaagcctactgtgtgc 836

                                                                       
Query: 65  atgaatctgtgtgcacacacagacacctactgtgtgcatgaatctgtgccttgactctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atgaatctgtgtgcacacacagacacctactgtgtgcatgaatctgtgccttgactctcc 776

                                                                       
Query: 125 cagtagtactgtgatccaacattctataataggatgattaataaggctcatgccttacgt 184
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 775 cagtagtactgtgatccaacattctataataggatgattaatcaggctcatgccttacat 716

                                                                       
Query: 185 gatggatacatcacatttatttgctgactttcacactggtagacatttagaatgctgtca 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 catggatacatcacatttatttgctgactttcacactggtagacatttagaatgctgtca 656

                                                                       
Query: 245 aatacgtactgttacaaaccacactgctatgaccatccctgcatctcttttctgccacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aatacgtactgttacaaaccacactgctatgaccatccctgcatctcttttctgccacct 596

                                                                       
Query: 305 gtgacatacccatgtcattactgctcagctgtgtactgaacttgcacataaaactcttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtgacatacccatgtcattactgctcagctgtgtactgaacttgcacataaaactcttca 536

                                                                       
Query: 365 gtcaaaagctaaaggtaaccgggctgctctgggaagactgtttgcacatgttggttctgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtcaaaagctaaaggtaaccgggctgctctgggaagactgtttgcacatgttggttctgt 476

                                                                       
Query: 425 aatagacttttacatcagcatcccctgcagactggactcattcccttatactaaaggtca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aatagacttttacatcagcatcccctgcagactggactcattcccttatactaaaggtca 416

                                                                       
Query: 485 ccacagaaccttctcaaactctctggccctgttgctgactgagctgtggtagcagaaggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ccacagaaccttctcaaactctctggccctgttgctgactgagctgtggtagcagaaggc 356

                                                                       
Query: 545 tccagtgctcacggtgaggagtttaagacctgtctgctccaggcctcagtgaaggtctct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tccagtgctcacggtgaggagtttaagacctgtctgctccaggcctcagtgaaggtctct 296

                                                                       
Query: 605 gcagttttcactgtttcttccaacagtgacatcaaccatcctccttaggctaaaattcct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 295 gcagttttcactgtttcttccaacagtgacatcaaccatcctccttaggttaaaattcct 236

                                          
Query: 665 gccatacacgtagcagccttatcttcctgga 695
           |||||||||||||||||||||||||||||||
Sbjct: 235 gccatacacgtagcagccttatcttcctgga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_o02.g1 MSMg01no270_o02.g1 CHROMAT_FILE:
MSMg01no270_o02.g1 PHD_FILE: MSMg01no270_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:39 2005
         (668 letters)



>mm_chr11_46237419_46238486
          Length = 1068

 Score = 1268 bits (656), Expect = 0.0
 Identities = 665/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacataggcacagaaaaaaaaaatcacacaaccacattaatcattgacaaagagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 201 actacataggcacagaaaaaaaaaatcacacaaccacattaatcattgaaaaagaataaa 260

                                                                       
Query: 61  tgacagaattcaacagctgttcatgacgaactctcatataacagaaacagagcttcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tgacagaattcaacagctgttcatgacgaactctcatataacagaaatagagcttcaata 320

                                                                       
Query: 121 tgaaacagcacaaaaccccttgagctaacactgtacttagtgatgaaggcccatgtttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaacagcacaaaaccccttgagctaacactgtacttagtgatgaaggcccatgtttct 380

                                                                       
Query: 181 ctataatcaaagccgagtaagaatgtctgcattccctcagtagagtgcctggagctgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctataatcaaagccgagtaagaatgtctgcattccctcagtagagtgcctggagctgtgg 440

                                                                       
Query: 241 acagtgccctaggcaaaaacacagcatcatcagatggagaaaacctgagtgctatatagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtgccctaggcaaaaacacagcatcatcagatggagaaaacctgagtgctatatagg 500

                                                                       
Query: 301 tactccctaggtattcacaatgaagttccaagaacagagatgcatgaattcaccaagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactccctaggtattcacaatgaagttccaagaacagagatgcatgaattcaccaagttc 560

                                                                       
Query: 361 acagaatacaaaatacaagtatttacatgtgaatctaaaatactgtacacagctccaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagaatacaaaatacaagtatttacatgtgaatctaaaatactgtacacagctccaagg 620

                                                                       
Query: 421 gaaaaaatctagaagtctaagccagtggagagagatatccaggtcatgaattcaaagttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaaaatctagaagtctaagccagtggagagagatatccaggtcatgaattcaaagttt 680

                                                                       
Query: 481 tagtatttctgtctttcccaaagtattttataggtgtggcatgctatcaattaaaaccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtatttctgtctttcccaaagtattttataggtgtggcatgctatcaattaaaaccct 740

                                                                       
Query: 541 aacaagatatttttgcacacacaaaattacataaaatttatccacatgagaaataaatac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacaagatatttttgcacacacaaaattacataaaatttatccacatgagaaataaatac 800

                                                                       
Query: 601 aaccactcagaaaaaccataaaaaataactaagcagtagggataagcctatccaatttca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaccactcagaaaaaccataaaaaataactaagcagtagggataagcctatccaatttca 860

                   
Query: 661 agacactg 668
           ||||||||
Sbjct: 861 agacactg 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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