BAC Information

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BAC

Clone NameMSMg01-271K23
Chromosome11 (Build37)
Map Location 46,325,360 - 46,325,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2
Downstream geneLOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271K23.T7 (MSMg01no271_k23.b1)MSMg01-271K23.TJ (MSMg01no271_k23.g1)
ACCAG411168AG411169
length769757
length of high quality
(start - end)		321 (40 - 360)303 (70 - 372)
definitionCHROMAT_FILE: MSMg01no271_k23.b1 PHD_FILE: MSMg01no271_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:36 2005CHROMAT_FILE: MSMg01no271_k23.g1 PHD_FILE: MSMg01no271_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCG
TGTGCATATATCTACACACATGCATACCTACATACACATAATGTAGGATA
AAATATATTTCAAAAAACAATGCATGAAGAGCATGTAGGTGGCACATGTA
TATACACATATAGAAAGAACACTAATACACATAAAATAAATATGAAATAA
TTAAAAACTAGTGAATAAAATCAAAGATCGTGGAAGCTAATAGCCAGGTC
CTTTCAGGTGCTTTCTGGTAAGTACTGTTTGAATTAGCCCCGTGAGAGCA
AGAGGTTTGGAGCTGGATAATTCCTGTAGAAGCAGGGAATAAAGGAACCC
TGGCAAGCCAGTGTTTGTACTTCACACCACGCCCTCTGCACTCATTTACA
GTAGCTGTCTGCCTTGCAGCTCTTTGCTTGAGTGTATTTCTGAGGCTCTT
TTAGTCTCTCCTCAAAAATCCTCTGTACCTTCTCTGTGACATGTTGTCAT
CTACACTGATGCAAAGCCATCTAGTCTGCTTCATTTGCTTCAAGACTGGT
ACTGTTTCAAAATCAAAGCCCACACCCTGCTGGCTACTGTCTGTTACACC
TAGTCCTCGGTGAGCTGTTTTTACAAAGACTTCTCCATGTCTAAGTTAAC
CCTGTTTGCCAATGCACACACAGAGTGTGTTCTCAACACATTCTGGACCA
TCGTCAGTGCCCAGTACACTTGCTTCTTATGGCTTCTATCACAATCTTCC
CAGTAGCACATATGTTACG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCCCTATGCTCTCTTTAGCCACTAAATCAT
TCTTTACTGATTGATTTGTTCATTGGTTGGTTGATTTGAGACAGGGTCTT
ACTATGTGGCACAGACTAGCCTGAAACTTTCTGTGTAGCCTAGGCCAGAC
TGGAACTCACAAACCTCCTGCCGCAGACTCTTTAGTTCTGGGATTACAGG
TGTTATCCATAATGCTTGGCTCCCATTTTGTACCTTGGATCTAAAACTAG
ATTTCAGTGAGGTCCAACACACACACTGTGTTTTGTTTTGTTAGTTTTGT
TTTGTTTTGTTCTGTTTTCTCTGCGACACCATGGGTGTCTGTGTGTGTTT
GGGTCTTGCGCTGGGAGAGTACTAAGTTAAAGCACTGCCCCCCCAGTACT
AAGTTAAAGCACTGGGCCATCACCATCTGACGACATTTTCTTCCTACCGT
CACTTTGCAGAGATATTTTCTCCAATTGGTCTTTCCTAGCATTTATGTCA
GAACAGGAACAGAAGATCCCTCAAGATTTGAATTAAGGGGGCTGGTAAGA
TGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCCGAAGGTCTAGAGTTC
AAATCCCAGCAACCACATGGTGGCTCACAGCCATCTGTAACAAGATCTTG
ACGCCCTCTTCTGGAGTGTATGAAGACAGCTACCGTGTACTTACTTATAA
ATAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_k23.b1 MSMg01no271_k23.b1 CHROMAT_FILE:
MSMg01no271_k23.b1 PHD_FILE: MSMg01no271_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:36 2005
         (321 letters)



>mm_chr11_46325156_46325876
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcgtgtgcatatatctacacacatgcatacctacatacacataatgtaggataaaa 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtgcatatatctacacacatgcatacctacatacacataatgtaggataaaa 264

                                                                       
Query: 65  tatatttcaaaaaacaatgcatgaagagcatgtaggtggcacatgtatatacacatatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatatttcaaaaaacaatgcatgaagagcatgtaggtggcacatgtatatacacatatag 324

                                                                       
Query: 125 aaagaacactaatacacataaaataaatatgaaataattaaaaactagtgaataaaatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagaacactaatacacataaaataaatatgaaataattaaaaactagtgaataaaatca 384

                                                                       
Query: 185 aagatcgtggaagctaatagccaggtcctttcaggtgctttctggtaagtactgtttgaa 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagatcatggaagctaatagccaggtcctttcaggtgctttctggtaagtactgtttgaa 444

                                                                       
Query: 245 ttagccccgtgagagcaagaggtttggagctggataattcctgtagaagcagggaataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttagccccgtgagagcaagaggtttggagctggataattcctgtagaagcagggaataaa 504

                            
Query: 305 ggaaccctggcaagcca 321
           |||||||||||||||||
Sbjct: 505 ggaaccctggcaagcca 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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