BAC Information

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BAC

Clone NameMSMg01-272M23
Chromosome11 (Build37)
Map Location 8,894,080 - 8,894,446
singlet/doubletsinglet
Overlap geneHus1
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800
Downstream geneSunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272M23.T7 (MSMg01no272_m23.b1)MSMg01-272M23.TJ (MSMg01no272_m23.g1)
ACCAG411989AG411990
length759663
length of high quality
(start - end)
367 (391 - 757)176 (76 - 251)
definitionCHROMAT_FILE: MSMg01no272_m23.b1 PHD_FILE: MSMg01no272_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:03 2005CHROMAT_FILE: MSMg01no272_m23.g1 PHD_FILE: MSMg01no272_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCAAATTTTGCAGTGAAGCTGTGAACCCCATTGGGTCACAGAGA
AATGCAAAACCATGAACAGACAGCCACCGTAATTACAAAGCTGCTCTATG
CAGCTCATAGACCACACACTGAGAAATTCCCTGTATTTGACTCCACGGTG
GAAATAGACAGGAGCTGGCATTTGGCTTCCCCACATTATGAGACTTTGTA
TAGGAGTCTGTTCTGGTCTGTTCACATGAGACAGTGTGAGCAGAGCAGCG
CTAGCCTACCCAGGCCATTTAAATACAATCCAGGATGTGCCTCACAGCAA
TCAAAGTGTGACTGCTGTTTTATCACCCCTGCCCACACATGGCAAGGCCG
TCAAGCTTTGCAGTGGCTGCAGGGCCTGCAGGAAGACAGCGTTTCTAGAC
AGATTTACTATACAAGGATGGACATGGGCAGAAGCCGAGGTGCAAAGGCT
GGGACCAGTATACATTTGACATGCAGATTGCAGATTCTGATTACCAGAGT
CAAGAGCACCAGGCCCTCCTAGCTGTAGTAAGGAATGGTGGTTTCAGAGG
CCTGGGCGTCTTGGGAGGAGGTTAAAAAGCTGTGTAGAGCAGGTAAGTAT
AGAAACTGAGAGAGATAACCAGGTGCCCAAGAGGGAAGGCACAGAGTGAA
AGGTGAGGAACGACTGTGGATGGAGTGACAGCCATAGAACCCTCAACCAT
CTAACAATN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCCCTTGTATTGATGTGACCAGAT
AGATGCCTGATACACTATGTTATTGACGAAGGGTTCATTTCAGCTTACAG
TTCAACAGGATTCAGTCCACCATGGAGAGGAAGGCCTGGCTGGCTGCAGA
AGCCATGACATTTGAGGTGGCTGTTCCCATTGCATCTTCCCACAGTCAGA
AAGTGGGNNCGAAGAAAAAAGGAAAGGGGACCTTCCTTTTTTTCTTTTTT
TCCTTNNNNTTTCNNANATTAAACCGAGGACCCCTTTTTTTTGGTGGCCC
CCCCTTTTCCCCCACGGTCAAAAAAAAGAAGGTTTTTCTTTTTTTTTTTG
CCCCCCCCCCCCCCCCGGGGNATATGTGTTCCTCNNNTNAAAAATATACC
CCCAAAAGTGTTTTTTGGTTTTCCCCCCCCCACAAAAAATATTTCTTCTT
TTTTTTTTTTTTAAATAAAAAATAACAAACACCCCGTGGGGTTTTTTTTT
TTTTCTATAAAAAAATACCCCCCTTCTCCCTTTTCCGGGGGGGGGAGTAT
CATACCTCCTTTTTTTCTTCCAAAAAAAAAAAACACCCCCCCCGCGCGGG
GCGTTGGGTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_m23.b1 MSMg01no272_m23.b1 CHROMAT_FILE:
MSMg01no272_m23.b1 PHD_FILE: MSMg01no272_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:03 2005
         (367 letters)



>mm_chr11_8893880_8894646
          Length = 767

 Score =  702 bits (363), Expect = 0.0
 Identities = 366/367 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaaggccgtcaagctttgcagtggctgcagggcctgcaggaagacagcgtttctagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaaggccgtcaagctttgcagtggctgcagggcctgcaggaagacagcgtttctagac 260

                                                                       
Query: 61  agatttactatacaaggatggacatgggcagaagccgaggtgcaaaggctgggaccagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatttactatacaaggatggacatgggcagaagccgaggtgcaaaggctgggaccagta 320

                                                                       
Query: 121 tacatttgacatgcagattgcagattctgattaccagagtcaagagcaccaggccctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatttgacatgcagattgcagattctgattaccagagtcaagagcaccaggccctcct 380

                                                                       
Query: 181 agctgtagtaaggaatggtggtttcagaggcctgggcgtcttgggaggaggttaaaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgtagtaaggaatggtggtttcagaggcctgggcgtcttgggaggaggttaaaaagc 440

                                                                       
Query: 241 tgtgtagagcaggtaagtatagaaactgagagagataaccaggtgcccaagagggaaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtagagcaggtaagtatagaaactgagagagataaccaggtgcccaagagggaaggc 500

                                                                       
Query: 301 acagagtgaaaggtgaggaacgactgtggatggagtgacagccatagaaccctcaaccat 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagagtgaaaggtgaggaacaactgtggatggagtgacagccatagaaccctcaaccat 560

                  
Query: 361 ctaacaa 367
           |||||||
Sbjct: 561 ctaacaa 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)