BAC Information

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BAC

Clone NameMSMg01-272N03
Chromosome11 (Build37)
Map Location 121,153,538 - 121,154,219
singlet/doubletsinglet
Overlap geneFoxk2
Upstream geneBahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf
Downstream geneWdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272N03.T7 (MSMg01no272_n03.b1)MSMg01-272N03.TJ (MSMg01no272_n03.g1)
ACCAG411997AG411998
length750795
length of high quality
(start - end)
684 (64 - 747)290 (69 - 358)
definitionCHROMAT_FILE: MSMg01no272_n03.b1 PHD_FILE: MSMg01no272_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:04 2005CHROMAT_FILE: MSMg01no272_n03.g1 PHD_FILE: MSMg01no272_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTAGCATTACCCGTACAATATATACCAGAAACACACAGACATAAACAATC
ACATACCTTGAGTCTTACTCCAGATTTCAAAACTACCTCATCTCAAAGCC
CCTGGGAACTGGTATTTCAAATCATCAGCATTCTGAACATAAACAAATGA
AAACAAGCCCTTAGACCTTAAGGGTCCTCACATGCACACACTGACTGTGC
TCCACAGTATCCCATGGGACAGAGTGGACAAATTAGTCAATGTTCTCTGG
GACCTTTAAAAGTCATGAGTGTTTTAAGCACAAACTTCATTCCATGGAGG
ACAGGAAAGTGCTAGGATCAAACCTACAACATGCTGGGCATTCTACTGAT
GAGCAACATCTCTGGCCCGTAGCCTATCTCCACAGATTAAAACATAGTCA
ATACAGCTGGAATTCAATATGCATTATGTTAAGGCCCTTGACACAGAACA
GACTATGGCAATGTTCCCCAAATCCAGTGACGTCCTGGGGATTGTCCAGC
AGTATGTGCAGCCCAGGAAGGGAAGGTGGAAAGGTGACGGTCTTACTTTT
CACCTTCTGTGACTAAAGACTCTTTAAAGGTCAATAGCAAGGATCCAGTT
TAACACATTTCTACATGTGCAGGTAAAAAGGGCTTCAGTGGGGCATGGCA
GCACACACCTTTAACCCAGCACTCATGAGAAGCAGACAGATCTCAGCTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTATGTGAAGCTAGGCTGGCCTCGAACTCAC
AGTGATCCTCCTGCCTCTGCCTCCACACTGATGTTTATTTTATTTTTATT
GTTACTCTTTTTTGGGGGGTTGGGGGGGAGACATGGTTTCTCTGTGTAGC
CCTGGCTGTCTTGGAACTCACTCTGTAGACCAAGCTAGCTTCTACCTCAG
AGATCCTCCTGCCTCTGCCTCCCAAGTGCTGAGATTAAAGGTGAGTGCTA
CCACCGCTTGGCTCTGATGTTTGTGTGTTTGTTTGTTTACACTGTAGCTC
TCTTCTTTTATTCTTTTCCCCCCCCCCCCGATCCCATTCGAGATGGTTGT
GAGCCACCGTGTGCTTGGTGATAGAAAAAATCAAGACCTCTGGTGGAGCC
CCCTCTGCTCTTGTACCTGTATTCTTTCTCTTCTGCTCTCCGATGTTTAT
TTTTAGTACAGGATATCTTATATTCTTTTTTTTGTTGTCCCGTCTTTATC
CTGCCCCCTCTCGCCCCACGGACTTTATTGCCCTTATCTCTACCTTTAAA
ATCTAATGTATTTTCTTTTTCTCATTCCTACTTTTATTGTCCCTTCCTCC
CCTCCAATCCTCTTTCCCTCTTCCCTATCTTCCCTTCGCATTATTTTTTA
CTGTTAGACCCTTTTCTTGTTTTATACTTTTTCGCCGCTGTCTCTCTTTA
CTACACTCATTTTCTTATCTCTTAATCAAACTTATCTTTATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_n03.b1 MSMg01no272_n03.b1 CHROMAT_FILE:
MSMg01no272_n03.b1 PHD_FILE: MSMg01no272_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:04 2005
         (684 letters)



>mm_chr11_121153393_121154476
          Length = 1084

 Score = 1280 bits (662), Expect = 0.0
 Identities = 677/682 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacaatatataccagaaacacacagacataaacaatcacataccttgagtcttactccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 827 tacaatatataccagaaacacacagacataaacaatcacataccttgagtcttactcaag 768

                                                                       
Query: 61  atttcaaaactacctcatctcaaagcccctgggaactggtatttcaaatcatcagcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 atttcaaaactacctcatctcaaagcccctgggaactggtatttcaaatcatcagcattc 708

                                                                       
Query: 121 tgaacataaacaaatgaaaacaagcccttagaccttaagggtcctcacatgcacacactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tgaacataaacaaatgaaaacaagcccttagaccttaagggtcctcacatgcacacactg 648

                                                                       
Query: 181 actgtgctccacagtatcccatgggacagagtggacaaattagtcaatgttctctgggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 647 actgtgctccacagtatcccatgggacagagtggacaaattagtcaatgctctctgggac 588

                                                                       
Query: 241 ctttaaaagtcatgagtgttttaagcacaaacttcattccatggaggacaggaaagtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctttaaaagtcatgagtgttttaagcacaaacttcattccatggaggacaggaaagtgct 528

                                                                       
Query: 301 aggatcaaacctacaacatgctgggcattctactgatgagcaacatctctggcccgtagc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 527 aggatcaaacctacaacatgctgggcattctactgatgagcaacatctctggcctgtagc 468

                                                                       
Query: 361 ctatctccacagattaaaacatagtcaatacagctggaattcaatatgcattatgttaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctatctccacagattaaaacatagtcaatacagctggaattcaatatgcattatgttaag 408

                                                                       
Query: 421 gcccttgacacagaacagactatggcaatgttccccaaatccagtgacgtcctggggatt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 407 gcccttgacacagaacagactatggcaatgttccccaaatccagtgacgttctggggatt 348

                                                                       
Query: 481 gtccagcagtatgtgcagcccaggaagggaaggtggaaaggtgacggtcttacttttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtccagcagtatgtgcagcccaggaagggaaggtggaaaggtgacggtcttacttttcac 288

                                                                       
Query: 541 cttctgtgactaaagactctttaaaggtcaatagcaaggatccagtttaacacatttcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cttctgtgactaaagactctttaaaggtcaatagcaaggatccagtttaacacatttcta 228

                                                                       
Query: 601 catgtgcaggtaaaaagggcttcagtggggcatggcagcacacacctttaacccagcact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 catgtgcaggtaaaaagggcttcagtggggcatggcagcacacacctttaacccagcact 168

                                 
Query: 661 catgagaagcagacagatctca 682
           || |||||||||||||||||||
Sbjct: 167 caggagaagcagacagatctca 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)