Query= MSMg01no272_p03.b1 MSMg01no272_p03.b1 CHROMAT_FILE:
MSMg01no272_p03.b1 PHD_FILE: MSMg01no272_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:13 2005
(720 letters)
>mm_chr11_86396824_86397940
Length = 1117
Score = 1336 bits (691), Expect = 0.0
Identities = 711/719 (98%), Gaps = 6/719 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgatgctagctagctaacatatgaattatactagtctaagcctggcagcacgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctgatgctagctagctaacatatgaattatactagtctaagcctggcagcacgg 262
Query: 64 tgcatacgaagttaattctagcacttgggaggcgagggtgtgttgatctct-atgagtcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 263 tgcatacgaagttaattctagcacttgggaggcgagggtgtgttgatctcttatgagtcc 322
Query: 123 aagactagcctggtctccatagtgaagtcttatctcaaaataaataagtaaataaacaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagactagcctggtctccatagtgaagtcttatctcaaaataaataagtaaataaacaag 382
Query: 183 caaacaaacaaataaataaaaatttcattgttaatttgggcattgcttttcaagtatggc 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaacaaacaaacaaataaaaatttcattgttaatttgggcattgcttttcaagtatggc 442
Query: 243 caggtaacaaactgttgttagtccctgtaaagaaaaaaacataaaccaaccagccaacca 302
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caggtaacaaa---ttgttagtccctgtaaagaaaaaaacataaaccaaccagccaacca 499
Query: 303 aaagccaacaaaggacaacctttccaaaatccatgaggcaaggtgacttttcatttt-at 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 aaagccaacaaaggacaacctttccaaaatccatgaggcaaggtgacttttcatttttat 559
Query: 362 ttatttagttatgactgtgacgactaccccaatttcctaggaagttttctcttgatactg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttatttagttatgactgtgacgactaccccaatttcctaggaagttttctcttgatactg 619
Query: 422 ctgctgttgtaccaaggtataagggctccaagtctcacaagacataaggaccacaatttt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgctgttgtaccaaggtataagggctccaagtctcacaagacataaggaccacaatttt 679
Query: 482 tgactgcaaaccatgatgctgggtaatgtttgaatgaaaacatttgatatggatggtcag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgactgcaaaccatgatgctgggtaatgtttgaatgaaaacatttgatatggatggtcag 739
Query: 542 atgaaagataccaaaatgtcagacagcccatcgactgctgttgccatgagattcaacagt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgaaagataccaaaatgtcagacagcccatcgactgctgttgccatgagattcaacagt 799
Query: 602 caacatcagtctgataagctatccgacaaggtggtacagccatgcagatgtcacgaccac 661
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 800 caacatcagtctgataagctatccgacaaggtggtacagccatgc-gatgtcacgaccac 858
Query: 662 gacagggggcaagcacgaggtgctcaggcagggtttatagcaaagcaaacatctctggt 720
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 859 gacagggggcaagcacgaggtgctcaggcagggtttaaagcaaagcaaacatctctggt 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1117
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1107
Effective search space: 785970
Effective search space used: 785970
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no272_p03.g1 MSMg01no272_p03.g1 CHROMAT_FILE:
MSMg01no272_p03.g1 PHD_FILE: MSMg01no272_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:13 2005
(291 letters)
>mm_chr11_86530477_86531167
Length = 691
Score = 532 bits (275), Expect = e-155
Identities = 287/291 (98%)
Strand = Plus / Minus
Query: 1 agtatatagaccaggctggagatctgcctgcccctgcctcttgagtgctgccattaaaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 572 agtatatagaccaggctggagatctgcctgcccctgcctcttgagtgctgggattaaaga 513
Query: 61 tgtgtgtcactagggctggtttaagaaaaacacagtttaaagttgttcttcatgacattt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 512 tgtgtgtcactagggctggtttaagaaaaacacagtttaaagttgttcttgatgacattt 453
Query: 121 tagaatattcagctctttccccaggtggtgacacatacctgtaatgtgtacattattaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tagaatattcagctctttccccaggtggtgacacatacctgtaatgtgtacattattaat 393
Query: 181 atgtacaacaggaagtagatggcctctagtccatagaaggctttgattcctttatttttt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 392 atgtacaacaggaagtagatggcctctagtccataaaaggctttgattcctttatttttt 333
Query: 241 ttttaaggcacagttattgattttgtctttctactgccttgaaaatttttg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttttaaggcacagttattgattttgtctttctactgccttgaaaatttttg 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
