BAC Information

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BAC

Clone NameMSMg01-274K21
Chromosome11 (Build37)
Map Location 7,878,900 - 7,879,262
singlet/doubletsinglet
Overlap genenone
Upstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274K21.T7 (MSMg01no274_k21.b1)MSMg01-274K21.TJ (MSMg01no274_k21.g1)
ACCAG413341AG413342
length759761
length of high quality
(start - end)
713 (36 - 748)384 (376 - 759)
definitionCHROMAT_FILE: MSMg01no274_k21.b1 PHD_FILE: MSMg01no274_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:16 2005CHROMAT_FILE: MSMg01no274_k21.g1 PHD_FILE: MSMg01no274_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGTTCCGTACCCCATTTTTTAAATAAGGCTATTTGATTTTCTGGAGTC
CATCTTCTTGAGTTCTCTCATATAGATTGGTTATCAGTCCCTTATCTGAT
TTAGGATTGGTAAAGATCCTTTCCCAAACTGTTGGTGGCCTTTTTGTCTT
ATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCTCACTTTCACCTC
TATAAGTTTCATGTGTCTCTGGTTTATGTGGAGTTTCTTGATCCACTTAG
GTTTGAGCTTTGTACAAGGAGATAAGAAAGGATCAATTCGCATTCTTCTC
CATGATAACCGCCAGTTGTGCCAGCACTATTTGTTGAAAAATGCTGTCTT
TTGTCCACTGGATGGTTTTAACTCCCTGTCAAAGATCAAGTAAGCATAGG
TATGTGGGTTCATTTCTGGGTTTTCAATTTTATTCCATTGATCTACCTGT
CTGTCGTTGTACCTGTACCATGCAGTTTTTCTCACAATTGCTCTGTAGTA
CAGCTTGAGGTCAGGCATGGTGATTCCCCCAGAGGTTCTTTTATTGTTCA
GAATANGTTTTGCTATCCCACATTTTTGTTATTCCTGATGAATTTGAAAT
TGCCCTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAATTTGGTTCCTAGCATCTACATTAAGCCACTCAC
AACCACCTGTAACTGCCGCATTAAGGAATTTGACACCATTTTCTGATTTC
CATAGGTACTGACACACATATGGTATGTGCAAGCTCATACTAATATGTAC
ATAGACACACACATAGAGATGCACACACACACATATATACAAGCACACAT
GCACAACATATAGACATACAGACATGCAGACATGCAGACATGCAGACATG
TGCACTGTGCTGGAGAGATGGCTCAATAGTTAAAAGCATTTGCTGATCCT
ATAGAAGACACAACTCCAGTTTCCAGCACACAGGTCAGGAAGCTCACAAT
CACTTGCAACTCCTCCTGTAACTTGTACTAGGAATCTGATGCTTCATACA
GAAACATACACACAAACAAAAACATTTAAATGTCTTACTGGACCTCACAC
ATACTACAGGTATGACTGTGCGTGTGGATATGGAACACATGGGAAAGGGT
CTGGAGGGTCAAAATAATTAAAAAAAATAGAGTGACTGGCAGACCTACCA
CTGGGTATATATTATTTGAAGAAATTGAAATTAATGATCTTCACACTTAT
GCTGAGTATAAACTTTCTGCCATAATCAAGCTACAAACATAGCCAAGATG
TTCATTAATGGATCAATCAAATAAGAATATGGTATGAGTACTCAAATGAG
TATCATATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_k21.g1 MSMg01no274_k21.g1 CHROMAT_FILE:
MSMg01no274_k21.g1 PHD_FILE: MSMg01no274_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:16 2005
         (384 letters)



>mm_chr11_7878900_7879683
          Length = 784

 Score =  702 bits (363), Expect = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacacaggtcaggaagctcacaatcacttgcaactcctcctgtaacttgtactaggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcacacaggtcaggaagctcacaatcacttgcaactcctcctgtaacttgtactaggaat 304

                                                                       
Query: 61  ctgatgcttcatacagaaacatacacacaaacaaaaacatttaaatgtcttactggacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctgatgcttcatacagaaacatacacacaaacaaaaacatttaaatgtcttactggacct 244

                                                                       
Query: 121 cacacatactacaggtatgactgtgcgtgtggatatggaacacatgggaaagggtctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cacacatactacaggtatgactgtgcgtgtggatatggaacacatgggaaagggtctgga 184

                                                                       
Query: 181 gggtcaaaataattaaaaaaaatagagtgactggcagacctaccactgggtatatattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gggtcaaaataattaaaaaaaatagagtgactggcagacctaccactgggtatatattat 124

                                                                       
Query: 241 ttgaagaaattgaaattaatgatcttcacacttatgctgagtataaactttctgccataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttgaagaaattgaaattaatgatcttcacacttatgctgagtataaactttctgccataa 64

                                                                       
Query: 301 tcaagctacaaacatagccaagatgttcattaatggatcaatcaaataagaatatggtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tcaagctacaaacatagccaagatgttcattaatggatcaatcaaataagaatatggtat 4

              
Query: 361 gag 363
           |||
Sbjct: 3   gag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)