BAC Information

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BAC

Clone NameMSMg01-275A10
Chromosome11 (Build37)
Map Location 4,444,195 - 4,615,228
singlet/doubletdoublet
Overlap geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5
Upstream geneMap1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
Downstream geneCabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275A10.T7 (MSMg01no275_a10.b1)MSMg01-275A10.TJ (MSMg01no275_a10.g1)
ACCAG413589AG413590
length739741
length of high quality
(start - end)		696 (44 - 739)667 (75 - 741)
definitionCHROMAT_FILE: MSMg01no275_a10.b1 PHD_FILE: MSMg01no275_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:41 2005CHROMAT_FILE: MSMg01no275_a10.g1 PHD_FILE: MSMg01no275_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(4,614,654 - 4,615,228)(4,444,195 - 4,444,887)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCTATTACGGACTTTATAGTGAATTCCAGGACAGTCAGGATTAT
GTAGAGAAAGCCTGCCTCAAACCAACAAACAAACAAACAAACAAACAAAC
AAACCCCAAAAACTAAAAACCAACCAAACAAGTGAAAATCAAACCAAACA
AATGGAGCATTTAACAATCTGTGCCGGCCAGTGGTGGTTCATGCCTTTAA
TCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAAGACAG
CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACT
GTGTTTCGAAAAAAAACCAACAAAACAAAACAACAATCTATGATAACCAC
AGATACAAAGACTTCCTTCATGGGAAGCCACTCCCACTAGCACATGCACA
GTCCTAAGGGGCCGTACTTCCCCATTCATTATCCACTTATTTTTCTCACC
AGCCACACATGCGATGAACATTTCCTTCCTCCCAAGCAGGGGTTCATACC
TTACCACAGTCTCTGCTCTCAGTCCCTGGACCCACTGGGTATGTGCCGGG
ATGGCTGACATAGTGGACACTGTACAAAGTAACAAGCTGTGTGTCCCAAG
ATCCCACTGGGCACCTGTATCCAACAGAATTCCTCCAAGACACAGAAGAC
CACAAAATCATAGGGCCCAGGTTGAACAACTTAATCTGN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCGTAGCTAAACAGAGAA
ACCCTGTCTCAAAAAAAAAAACAATAAAAAAAACAAAACCCAAATAAACA
AACAACAACAACAAACAAAAAATCTACCACAACCACATACAATTTTTAAA
AAGTTAAAATTTAAAATTCCAAAATGTAAAGATAATTCATTTTTCTAACT
TGCTCTTTATAATTACTTCTGTGATATATTCTTTTTCTTTTCCTATTTGA
CTCAGATGTATTAAGCCATTAACATAATTATAAGGAAGTTGCACAAGTAA
TCTATAATGTTATTTTCTGACTTCCTCTATAAAGAGGGAAGGTATCACTT
CCTACTGAAATTAAGAATTAAAAACCAGGGCTGGTAAGATGGCTCAGCAG
TTAAGAGTACTGACTGCTCTCACGAGGCAGAGGCAGGCAGATTTCTGAGT
TTGAGGCCAGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA
AAACAAAAACAAAAACAAAAAACCCAAAAGTACTGACTGTTCTTCCAGAG
GTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTTTAAAATGAGCAAG
CAAGGGAGTGAAAGTGCGAGGAAGAGAGAACAGGAAATAGTTTCTTCCGA
AGTGTATTTTATAGAAATCATGGTTAATAGCTTGCTCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_a10.b1 MSMg01no275_a10.b1 CHROMAT_FILE:
MSMg01no275_a10.b1 PHD_FILE: MSMg01no275_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:41 2005
         (696 letters)



>mm_chr11_4614133_4615228
          Length = 1096

 Score = 1089 bits (563), Expect = 0.0
 Identities = 572/575 (99%)
 Strand = Plus / Minus

                                                                        
Query: 121  taaaaaccaaccaaacaagtgaaaatcaaaccaaacaaatggagcatttaacaatctgtg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 taaaaaccaaccaaacaagtgaaaatcaaaccaaacaaatggagcatttaacaatctgtg 1037

                                                                        
Query: 181  ccggccagtggtggttcatgcctttaatcccagcactcgggaggcagaggcaggtggatt 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ccggccagtggtggttcatgcctttaatcccagcactcgggaggcagaggcaggtggatt 977

                                                                        
Query: 241  tctgagttcgaagacagcctggtctacaaagtgagttccaggacagccagggctatacag 300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 976  tctgagttcgaagacagcctggtctacaaagtgagttctaggacagccagggctatacag 917

                                                                        
Query: 301  agaaactgtgtttcgaaaaaaaaccaacaaaacaaaacaacaatctatgataaccacaga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  agaaactgtgtttcgaaaaaaaaccaacaaaacaaaacaacaatctatgataaccacaga 857

                                                                        
Query: 361  tacaaagacttccttcatgggaagccactcccactagcacatgcacagtcctaaggggcc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  tacaaagacttccttcatgggaagccactcccactagcacatgcacagtcctaaggggcc 797

                                                                        
Query: 421  gtacttccccattcattatccacttatttttctcaccagccacacatgcgatgaacattt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  gtacttccccattcattatccacttatttttctcaccagccacacatgcgatgaacattt 737

                                                                        
Query: 481  ccttcctcccaagcaggggttcataccttaccacagtctctgctctcagtccctggaccc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  ccttcctcccaagcaggggttcataccttaccacagtctctgctctcagtccctggaccc 677

                                                                        
Query: 541  actgggtatgtgccgggatggctgacatagtggacactgtacaaagtaacaagctgtgtg 600
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  actgggtatgtgctgggatggctgacatagtggacactgtacaaagtaacaagctgtgtg 617

                                                                        
Query: 601  tcccaagatcccactgggcacctgtatccaacagaattcctccaagacacagaagaccac 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  tcccaagatcccactgggcacctgtatccaacagaattcctccaagacacagaagaccac 557

                                               
Query: 661  aaaatcatagggcccaggttgaacaacttaatctg 695
            | |||||||||||||||||||||||||||||||||
Sbjct: 556  acaatcatagggcccaggttgaacaacttaatctg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_a10.g1 MSMg01no275_a10.g1 CHROMAT_FILE:
MSMg01no275_a10.g1 PHD_FILE: MSMg01no275_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:41 2005
         (667 letters)



>mm_chr11_4444021_4445087
          Length = 1067

 Score = 1110 bits (574), Expect = 0.0
 Identities = 652/696 (93%), Gaps = 32/696 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccgtagctaaacagagaaaccctgtctcaaaaaaaaaaa--caataaaaaaa 58
           |||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||
Sbjct: 175 caggacagccgtggctaaacagagaaaccctgtcttaaaaaaaaaaaaacaataaaaaaa 234

                                                                       
Query: 59  aca-aaacccaaataaacaaacaacaacaacaaacaaaaaatctaccacaaccacataca 117
           | | ||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 235 aaacaaacccaaataaacaaacaacaacaa---acaaaaaatctaccacaaccacataca 291

                                                                       
Query: 118 atttttaaaaagttaaaatttaaaattccaaaatgtaaagataattcatttttctaactt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atttttaaaaagttaaaatttaaaattccaaaatgtaaagataattcatttttctaactt 351

                                                                       
Query: 178 gctctttataattacttctgtgatatattctttttcttttcctatttgactcagatgtat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gctctttataattacttctgtgatatattctttttcttttcctatttgactcagatgtat 411

                                                                       
Query: 238 taagccattaacataattataaggaagttgcacaagtaatctataatgttattttctgac 297
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 taagccattaacagaattataaggaagttgcacaagtaatctataatgttattttctgac 471

                                                                       
Query: 298 ttcctctataaagagggaaggtatcacttcctactgaaattaagaattaaaaa-ccaggg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 472 ttcctctataaagagggaaggtatcacttcctactgaaattaagaattaaaaaaccaggg 531

                                                                       
Query: 357 ctggtaagatggctcagcagttaagagtactgactgctctcacgaggcagaggcaggcag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctggtaagatggctcagcagttaagagtactgactgctctcacgaggcagaggcaggcag 591

                                                                       
Query: 417 atttctgagtttgaggccagcaggacagccagggctatacagagaaaccctgtctcaaaa 476
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atttctgagttcgaggccagcaggacagccagggctatacagagaaaccctgtctcaaaa 651

                                                                       
Query: 477 aaacaaaaacaaaaacaaaaaa-------------------------cccaaaagtactg 511
           || |||||| ||||| ||||||                         |||||||||||||
Sbjct: 652 aaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccaaaagtactg 711

                                                                       
Query: 512 actgttcttccagaggtcctgagttcaattcccagcaaccacatggtggttttaaaatga 571
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 712 actgttcttccagaggtcctgagttcaattcccagcaaccacatggtggttttaaaataa 771

                                                                       
Query: 572 gcaagcaagggagtgaaagtgcgaggaagagagaacaggaaatagtttcttccgaagtgt 631
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct: 772 gcaagcaagggagtgaaagtgtgaggaagagagaacaggaaatagtttcttctgacgtgt 831

                                               
Query: 632 attttatagaaatcatggttaatagcttgctcacat 667
           ||||||||||||||||||||||||||||||||||||
Sbjct: 832 attttatagaaatcatggttaatagcttgctcacat 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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