BAC Information

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BAC

Clone NameMSMg01-276A16
Chromosome11 (Build37)
Map Location 78,098,515 - 78,098,822
singlet/doubletsinglet
Overlap gene2610507B11Rik
Upstream geneSsh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2
Downstream geneBC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276A16.T7 (MSMg01no276_a16.b1)MSMg01-276A16.TJ (MSMg01no276_a16.g1)
ACCAG414332AG414333
length749739
length of high quality
(start - end)
312 (46 - 357)217 (436 - 652)
definitionCHROMAT_FILE: MSMg01no276_a16.b1 PHD_FILE: MSMg01no276_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:54 2005CHROMAT_FILE: MSMg01no276_a16.g1 PHD_FILE: MSMg01no276_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTTTTTAAAAAGTTAAGTCTTGCAGAAAAGTGAATGGTGCTC
TCTTCTGGAAAGCTGATCTTTCCCAATCACGCAGTAGCAAGAATAAGGGG
TAGGTCAGTATAAAAGATCTGCAATCCACATTCCTAAGATTTCATAAGCT
AGACCCACAGGGTAGAGATGGAGGCAAAAATGTGTAGGTGCCGCTATTAG
TGATGTTTAGGTGACCTGTCTAGAACAAGCCATACAGTCTTGGGACACGT
AAACATAAACAATAGGAATTCCAACAGCTGTAATTGACTGAGAAGATGTA
CCAATCATATTTTTTTTCCAGCCCGACCCATTAGTTTCTTTCTTACCCAC
TCTGCCATCTCACCAGCCCAGCACTACTTTACTTAACTGGGATCTAAGTA
AACGGCAAGATCAAAGTTCAGGTGAGTCTAACCTGAATTCTAGAAAGGCT
TACGCTCACCTTCCGCTTGGGTTCTACGTGGAGAAGCAGGTTGTTGACAA
TGTCCAGAATCATAGCATACTGAGCTGGGTTGGTAGAAATTTCCAATTCG
TGGTGGATGAGAGTAAAAGTATCCACAGCCCCTACAGAATTGTAAGCAGT
TAAATAACAGGTTCAGGTTTTTCCCCTAAATATTCAATCTCCTAACATAT
ATATATATATATTTTTTTTTTTTCCCCCCGAGACAGGGTTCTGCTATGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCAAAAAAATTCCTGAGTGATTGCAGTGGGGGAACC
ATGAGAGCAATTTCGTGTTTGCCCACAAATTATCATTAGTAGTTTCATTT
GCTATCAGATAGAAGGAGCAGGAGAAATGGGCTTTTTGCCAATTGCAGCT
TCCCTCCGATTAGGGCGTTAGTTCAATTATGTCCAATTAGCTTTTATTGC
AGATAGCAGTGATAATTACTCTCGAGTCAGTTTCGACTGCAGTTATCCCA
AGGCTGAAGTATGAACTTGTTTGTTTTTAATGACCACCATGGCACAGTTC
ACTCCCTGTTTGCTGNTTCTGCCTTTCCACACCTCTTTTAGACAAGAGGT
CAGAATGTTATAGAAGTCTGTCACACAAATAAAACATATTGTCCTTCTTT
TGAAGAGCTGTATAGGATCATATTTTAGAAGAATCTATTAGGAACAGCCT
TAATGTTTTGTTTTGTTTTTTTTTTTTTAGATTTTTATTTATTTATTATA
TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGAGAGTCAGAT
CTCCTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTC
CTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTTAC
CAGCCCTTAATGTTTTTTTTATATCCTGAGATCATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_a16.b1 MSMg01no276_a16.b1 CHROMAT_FILE:
MSMg01no276_a16.b1 PHD_FILE: MSMg01no276_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:54 2005
         (312 letters)



>mm_chr11_78098311_78099022
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgttttttaaaaagttaagtcttgcagaaaagtgaatggtgctctcttctgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcatgttttttaaaaagttaagtcttgcagaaaagtgaatggtgctctcttctgga 453

                                                                       
Query: 65  aagctgatctttcccaatcacgcagtagcaagaataaggggtaggtcagtataaaagatc 124
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagctgacctttaccaatcacgcagtagcaagaataaggggtaggtcagtataaaagatc 393

                                                                       
Query: 125 tgcaatccacattcctaagatttcataagctagacccacagggtagagatggaggcaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgcaatccacattcctaagatttcataagctagacccacagggtagagatggaggcaaaa 333

                                                                       
Query: 185 atgtgtaggtgccgctattagtgatgtttaggtgacctgtctagaacaagccatacagtc 244
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atgtgtaggtgccactgttagtgatgtttaggtgacctgtctagaacaagccatacagtc 273

                                                                       
Query: 245 ttgggacacgtaaacataaacaataggaattccaacagctgtaattgactgagaagatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttgggacacgtaaacataaacaataggaattccaacagctgtaattgactgagaagatgt 213

                   
Query: 305 accaatca 312
           ||||||||
Sbjct: 212 accaatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)