Query= MSMg01no277_d20.b1 MSMg01no277_d20.b1 CHROMAT_FILE:
MSMg01no277_d20.b1 PHD_FILE: MSMg01no277_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:20 2005
(318 letters)
>mm_chr11_84235015_84235731
Length = 717
Score = 559 bits (289), Expect = e-164
Identities = 304/309 (98%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagttcatcctcaagccaagaagagacgctgtcctcggtgacagcacggataaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 ggaattcagttcatcctcaagccaagaagagacgctgtcctcggtgacagcacagataaa 557
Query: 64 cccagaggtctgcgcgctgagagaagccaggaacagaaagacaaaaatctcttgcgtggc 123
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cccagaggactgcgtgctgagagaagccaggaacagaaagacaaaaatctcttgcgtggc 497
Query: 124 taccagcccctgggaggggatggccttggggtgtagagagttgtctaggctggaggagtg 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 496 taccagcccctgggaggggatggccttggggtgtagagagttgtctaggatggaggagtg 437
Query: 184 agctttgcggaccagagtaatgaagggaataaattccagaagtctcaccataaaaaaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 436 agctttgcggaccagagtaatgaagggaataaattccagaagtctcaccat-aaaaaaaa 378
Query: 244 tgagcagcgtggtactggatctgttaaaaggctccattcagccacttcatgctgtgcaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgagcagcgtggtactggatctgttaaaaggctccattcagccacttcatgctgtgcaca 318
Query: 304 tctagaatg 312
|||||||||
Sbjct: 317 tctagaatg 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_d20.g1 MSMg01no277_d20.g1 CHROMAT_FILE:
MSMg01no277_d20.g1 PHD_FILE: MSMg01no277_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:20 2005
(690 letters)
>mm_chr11_84080525_84081610
Length = 1086
Score = 1230 bits (636), Expect = 0.0
Identities = 680/700 (97%), Gaps = 14/700 (2%)
Strand = Plus / Plus
Query: 1 taggatcttcacagtggaatattatggagcactgagaatagatgattcctaggaacacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggatcttcacagtggaatattatggagcactgagaatagatgattcctaggaacacgt 260
Query: 61 ataaacaaatgagtcaatacataggccttctggttttttaatcaggttcaaaaccaggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaacaaatgagtcaatacataggccttctggttttttaatcaggttcaaaaccaggat 320
Query: 121 ataagaagttagatatatcagtgataaatgtaaagagaacaaaagaataattattataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagaagttagatatatcagtgataaatgtaaagagaacaaaagaataattattataaa 380
Query: 181 ttcacctgagtaattatttctgaagaagaatacatagcaggtcacttgggagaccgaggc 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacctgagta----tttctgaagaagaatacatagcaggtcacttgggagaccgaggc 436
Query: 241 aggaagattgccaaatttaaggccagcgtcgggccagatactgagatatgtctgtttaga 300
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 437 aggaagattgccaaatttaaggccagcgtcgggccagatactgagaaatgcctgtttaga 496
Query: 301 agagggggtttggtgattatga-tggagagacggttcaacagtaatagcacttactgcag 359
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 497 agagggggtttggtgattatgactggagagacggttcaacagtcatagcacttactgcag 556
Query: 360 agtcacagccgcctgcaactctagttctagagggttccacacctctcctctccacgctga 419
||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 557 agtcacagccgcctgcaactctagttctagagggtccctcgcctctcctctccacgctga 616
Query: 420 gcttctgcatacatgtggcgcataagtacatacaataaaattaaattagtcttcttttt- 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcttctgcatacatgtggcgcataagtacatacaataaaattaaattagtcttctttttt 676
Query: 479 cccctggcttttcaagacagggtttttctgtgtagccctgactgtcttggaaccggctct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cccctggcttttcaagacagggtttttctgtgtagccctgactgtcttggaaccggctct 736
Query: 539 cttgaattcacagaaatctgcctgcctcttccttccaagtgcaaacgccaccactgcctg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cttgaattcacagaaatctgcctgcctcttccttccaagtgcaaacgccaccactgcctg 796
Query: 599 gctaaagtaataatcttttaaagtt--ctctctct--ctctctctctctctct----aaa 650
||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 797 gctaaagtaataatcttttaaagttttctctctcttcctctctctctctctctctttaaa 856
Query: 651 ctgagtttgatagtgcatacttgtaatttcagtacttggg 690
||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctgagtttgatagtgcatacttgtaatttcagtacttggg 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1086
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1076
Effective search space: 731680
Effective search space used: 731680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
