BAC Information

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BAC

Clone NameMSMg01-277J22
Chromosome11 (Build37)
Map Location 112,103,675 - 112,103,940
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
Downstream geneEG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277J22.T7 (MSMg01no277_j22.b1)MSMg01-277J22.TJ (MSMg01no277_j22.g1)
ACCAG415469AG415470
length744760
length of high quality
(start - end)
319 (38 - 356)309 (384 - 692)
definitionCHROMAT_FILE: MSMg01no277_j22.b1 PHD_FILE: MSMg01no277_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:47 2005CHROMAT_FILE: MSMg01no277_j22.g1 PHD_FILE: MSMg01no277_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CTGGAGGAATATCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATC
CTTAATCATCATGTACCCGCAAATCAAAACAACCCTGAGATGCCACCTCA
CACCAGTCAGAATGGCTAAGATAAAAAAATCAAGTGACATCAGATGCTGG
CGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGTATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTTG
AGATAGTACTACCAGAGGATCCCGCAATAACTCTCCTGGGCATATATCCA
GAATATGTTTTTTCTGCCCCCCCCGACACATACTACACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAAATATAAAGAACCCAGATGTCCCTCAA
CAGAGGAGTGGAGACAGAAAATGTGGTACATTTACACAATGGAGTACTAC
TCAGCTATTAAACAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCGC
ATGATATGTACTCACTGTTAAGTGCATATTAGCCCAGAAACTTATAATAT
CCAGGAAACAAGATACAATTTGCAAAACACATGAAATTCAAGAAAAATGA
AGACCAAAGTGTGTACACTTTGCCCCTTCTTAGAAATGGGAACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGAGAGCTCAGAACTGAACA
GATAAGACACAGAGTTAGGCTTGAACCCACAGGATCAAAACTAAATCAAA
GACCTGATAGTCTGCGCACAAATATCTGTGTCATTAGAGACATAGCCAAA
GTGTCCTCAGAACCCACTGCAAAATATAAATATTCTAAGGATTTTGTTGT
TGTTGTTGATGATGATTCCCTAAACTCTGAGGGTCGGGGAAATATCGATG
GGAACTTATTCTTTGTTGAGGACCAGCAGGCTACAGAAAGAAAGGGCTTC
GACTCACTTGGAGAGTTCTTTGAGTGACTGACCCCTTTGAAGTAAGTCTG
AGCACTGGACTGATAGCAGGGAAATATGGGAGGCACACAAAAATCCTAGC
AAATGTCTAGTCTACAAGAAAGAGCTGCAAGACTGTTTTTAAATGGAGTG
TGGTATAGGTAAGTCATGAGGCAACCATCATTAGGATGAAACTGGAGTCT
GAGAAGCCAGTCAGTGAACATGGATTTTTGGAACATTTTAGAGAACTCTA
AACTATGCTCAAAATAGAAATGGAAAGAAAGAAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGATGGTAGTTATGCTTCTTCTCTTATCCTTCTCTCTTTTCCCA
TCATTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_j22.g1 MSMg01no277_j22.g1 CHROMAT_FILE:
MSMg01no277_j22.g1 PHD_FILE: MSMg01no277_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:47 2005
         (309 letters)



>mm_chr11_112103475_112104183
          Length = 709

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttgaagtaagtctgagcactggactgatagcagggaaatatgggaggcacacaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttgaagtaagtctgagcactggactgatagcagggaaatatgggaggcacacaaaaa 260

                                                                       
Query: 61  tcctagcaaatgtctagtctacaagaaagagctgcaagactgtttttaaatggagtgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctagcaaatgtctagtctacaagaaagagctgcaagactgtttttaaatggagtgtgg 320

                                                                       
Query: 121 tataggtaagtcatgaggcaaccatcattaggatgaaactggagtctgagaagccagtca 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataggtaagtcacgaggcaaccatcattaggatgaaactggagtctgagaagccagtca 380

                                                                       
Query: 181 gtgaacatggatttttggaacattttagagaactctaaactatgctcaaaatagaaatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaacatggatttttggaacattttagagaactctaaactatgctcaaaatagaaatgg 440

                                     
Query: 241 aaagaaagaaaggaaggaaggaagga 266
           |||| ||| |||||||||||||||||
Sbjct: 441 aaaggaaggaaggaaggaaggaagga 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)