BAC Information

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BAC

Clone NameMSMg01-278G11
Chromosome11 (Build37)
Map Location 80,205,370 - 80,205,649
singlet/doubletsinglet
Overlap geneZfp207
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik
Downstream geneLOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278G11.T7 (MSMg01no278_g11.b1)MSMg01-278G11.TJ (MSMg01no278_g11.g1)
ACCAG416038AG416039
length772786
length of high quality
(start - end)
189 (180 - 368)281 (129 - 409)
definitionCHROMAT_FILE: MSMg01no278_g11.b1 PHD_FILE: MSMg01no278_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:43 2005CHROMAT_FILE: MSMg01no278_g11.g1 PHD_FILE: MSMg01no278_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGCCCCCTTTTCCCTCGTCTGAATACGATTTTTTTTCCCCCCTCTAAC
ACNCCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGA
TCCGCGGAATTCAGTTTTTCCCAGAGTTGTTCAAATAATCCCTTCTTCTA
TTCAGTGTCACTGTGGTCTGTGCTGCCCGCCCCCTTGTGTTCCTAGTCCT
GGCAATAATGTCTCTCCATTTCTGTCTCTTAAGCTAGAAGCTTGTCAGTT
TTATTCATTTTCTGAAAGAATCATCATTTTGTTACCTTGATTTCCAAACA
CGTTCATTTCTTACTTTTTTTTTTAAAGATTTATTTATTTATTTATTGTA
AGTACACTGTAGCTGTCCTCTTATACTCCAGAAGAGGGAGTCAGATCTCG
TTACGGAAGGTTGTTTTTTACCATGCCCCCCCCCCCCCATTTGAACTCCT
GACCTTCATAAGAGTATTCGGGTGCTCTTACCAACTGAAACATCTCACCA
GTCCCATTTCTTACTTTTATTGTTTTCTTTTGTCTCCTTACTCCATGATA
CTTGTTAAAGGTTAAAATTGCCACCATTGTTTGCTATGGCCTGCTCTAAT
TTTTTCTTCCACGATATATCCTAACAGCCCTCTGTGCGCCCCCTCCTTGT
AGTTGACTGGTCTGACTGTCTCCAATGTATATTATCACCTTGGACCGCTC
CATAAACAAAACAAATTAAACCTCATTGTCTGTCTTTTTCGTATACATCC
TATTTTTGAAACTCTCATTGTG
NTAATCTTTTTTTTTNTTTNTTTTTTTTCCCCTTCTCCCTATAGNNNTNT
NCTCCAATGATANTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCAATGACTCAAGCACAGGC
TGTTTCAGCACCAGGTATTCTTACTAGACCACCTGCACCAACAGCAGCAG
TACCTGCTCCACAGCCTCCAGTTACTAAGCCTCTTTTCCCCAGTGCTGGA
CAGGTAAGGTGAAATTCTTGAAAAGGAGTATATTGTATGTTTAAGGTAAA
ATGGCTTGTTCACAGATAACCTTGAAATTGTTAGATTATGTGATCTATTA
AAATAGAGCCTATCATTTGTTATATTTATACTTTGATTTCCTCTGTTCAC
AGCAGGTATATTTTAATCACCACCTTTCTTTCCAGATGTGGATTCTTTAG
CTGTCGCTAGATGTGAGAGTCGAATTTCAGAAGACTTATGTAACTGATGT
TTCCAGGTCCTCCTCTCTTGGTGAAGGGAGTGGAATTAGGTTGGAGCCAA
CAATAAGACCTTAGGCATGGCGGTAGTGGCATATGGTCTTTTAACACAGC
TTTCAAGAGCAGAGTCGGGTGAATCTTTTGTATTAAAGGCTTTTGGGAAG
TCAGTGCCTACCTAAAACTCCCCGCGATAATCAAATACGAACTACGCCAA
GAACTTTTGTCGGCCGTCTTGCCCTCAATTTAACAACCGTTACCAAATTG
GCATTTGCTACCTTTTGTAGTCTGGCAAGCTCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_g11.g1 MSMg01no278_g11.g1 CHROMAT_FILE:
MSMg01no278_g11.g1 PHD_FILE: MSMg01no278_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:43 2005
         (281 letters)



>mm_chr11_80205170_80205850
          Length = 681

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaatgactcaagcacaggctgtttcagcaccaggtattcttactagaccacctgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctccaatgactcaagcacaggctgtttcagcaccaggtattcttaatagaccacctgcac 260

                                                                       
Query: 61  caacagcagcagtacctgctccacagcctccagttactaagcctcttttccccagtgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagcagcagtacctgctccacagcctccagttactaagcctcttttccccagtgctg 320

                                                                       
Query: 121 gacaggtaaggtgaaattcttgaaaaggagtatattgtatgtttaaggtaaaatggcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaggtaaggtgaaattcttgaaaaggagtatattgtatgtttaaggtaaaatggcttg 380

                                                                       
Query: 181 ttcacagataaccttgaaattgttagattatgtgatctattaaaatagagcctatcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacagataaccttgaaattgttagattatgtgatctattaaaatagagcctatcattt 440

                                                   
Query: 241 gttatatttatactttgatttcctctgttcacagcaggta 280
           | ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctatatttatactttgatttcctctgttcacagcaggta 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)