BAC Information

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BAC

Clone NameMSMg01-278H03
Chromosome11 (Build37)
Map Location 12,622,955 - 12,776,335
singlet/doubletdoublet
Overlap genenone
Upstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
Downstream geneLOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278H03.T7 (MSMg01no278_h03.b1)MSMg01-278H03.TJ (MSMg01no278_h03.g1)
ACCAG416067AG416068
length718710
length of high quality
(start - end)
244 (71 - 314)234 (109 - 342)
definitionCHROMAT_FILE: MSMg01no278_h03.b1 PHD_FILE: MSMg01no278_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:46 2005CHROMAT_FILE: MSMg01no278_h03.g1 PHD_FILE: MSMg01no278_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,622,955 - 12,623,198)(12,776,102 - 12,776,335)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCTTTGTTTCAAAGAATTTTAGCTCTCTGAGTCTGGCTTGTCCAAGT
GTTTCAGCTTGAATCATACCTGCCTTCCAAAACCCATGTTTCATAGGCTT
GGTTCCAAGAAAAGTATTGTTGAGGGTTAGGGACTGATGGAAGGGTTTTG
AGTCATTAGGGTTGTGACCTTGAAAAGATATTCGATATCCTGAAACTCAC
TCCCCACTTTCCTTGGCTTCCTAATCTGCTCTTCCATGTTGTTCTGCTAT
GAGGTGCTAACTCACCTTTGGTCTCAAATAGTGGTAAGAGTCAATTATGT
ATTGGGAACATCAAACACTGTGAGCAGAAATACACTCCATTTCTTTATAA
ATTTATTTCCTTGGTATTTGTCACAGAAAGCTTGCCAACATTCAAAGTTA
TGATGTCAGATCTTGAGGAGAATGACAACGAGCTGTTGTAAAGCTTTTGA
TGCTCATTGAGGGAGCACAATGTCTAATACTCAGGTAGTAATCTTGGCAG
TGAGATGTGGTGAGTGGCCGCCAGGTAGCTTAGATTTGTTGCAGGTGACA
ACATTTTTGAAGGAATCCATTGAACCTGATTTAATGATGTTTCTCTGCTG
TCCTGGATCCACTTCTCCCTCAGGGGAAGCCTGAGCTTTTGCACCCACAA
CTGAATTGTATGCACAGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACCC
ACGAAATTCTTACCAGGTATACATCTGACAGAGGGTTAGTGTTCAGAATA
TATACCCTACTCAAAAACTAAATACCAAGGACACAAATAACTCAATTAAA
AACAGGTGCATGGCATTAAACAAGGAGTTCTCAAAAAAGAAATACAAAGA
CTGAGAAATATTTTTTAATATTCAACTTTAATCATCAATAAAATACTTCT
TTGAAATTTCAGAATGATCAAGGTTACAACAAACAACAACAACAAAAACA
AAAACTAAGATTACCAAAAAAGTTTACCAGGTACCAGGAAAATCCTTTTT
GTTTGACACCCCCCCGGGCAGTATAGAGGAGTTAACATGGAGTTACCCTA
TACTAGAGAACAATTCTTCCCCAGGCAACATATGCTATCAAATAAAAATT
CCATCACCCAGTATGGGTAACCTCCATTTTAAATGTTGGACAATAGAGCT
CCTTAGACATTATAAGACTATTGTCAGGGCCCTTGCTTTTCCTCTAGAAT
TTGATGGTAAGACTCCACCGCTAAACACAGCACGCACTTGCATAGAAAGA
TGTAGAGAAATCAAGCAAGCACTAAACTAGACTCTTCATCTTTACTAGTT
AGCTGGAATAATGCTAAAGCCAGTGCAAATGAATTCGGTGAAGAAGTCAT
GACTGTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_h03.b1 MSMg01no278_h03.b1 CHROMAT_FILE:
MSMg01no278_h03.b1 PHD_FILE: MSMg01no278_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:46 2005
         (244 letters)



>mm_chr11_12622755_12623398
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagctctctgagtctggcttgtccaagtgtttcagcttgaatcatacctgccttccaa 60
           |||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 tttagccctctgagtctggcttgtccaagtgtttcagcttgaatcataaatgccttccaa 260

                                                                       
Query: 61  aacccatgtttcataggcttggttccaagaaaagtattgttgagggttagggactgatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacccatgtttcataggcttggttccaagaaaagtattgttgagggttagggactgatgg 320

                                                                       
Query: 121 aagggttttgagtcattagggttgtgaccttgaaaagatattcgatatcctgaaactcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagggttttgagtcattagggttgtgaccttgaaaagatattcgatatcctgaaactcac 380

                                                                       
Query: 181 tccccactttccttggcttcctaatctgctcttccatgttgttctgctatgaggtgctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccactttccttggcttcctaatctgctcttccatgttgttctgctatgaggtgctaa 440

               
Query: 241 ctca 244
           ||||
Sbjct: 441 ctca 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no278_h03.g1 MSMg01no278_h03.g1 CHROMAT_FILE:
MSMg01no278_h03.g1 PHD_FILE: MSMg01no278_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:46 2005
         (234 letters)



>mm_chr11_12775902_12776535
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcaaaaactaaataccaaggacacaaataactcaattaaaaacaggtgcatggcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 actcaaaaactaaataccaaggacacaaataactcaattaaaaacaggtgcatggcatta 375

                                                                       
Query: 61  aacaaggagttctcaaaaaagaaatacaaagactgagaaatattttttaatattcaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aacaaggagttctcaaaaaagaaatacaaagactgagaaatattttttaatattcaactt 315

                                                                       
Query: 121 taatcatcaataaaatacttctttgaaatttcagaatgatcaaggttacaacaaacaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 taatcatcaataaaatacttctttgaaatttcagaatgatcaaggttacaacaaacaaca 255

                                                                 
Query: 181 acaacaaaaacaaaaactaagattaccaaaaaagtttaccaggtaccaggaaaa 234
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 254 acaacaaaaacaaaaacaaagattaccaaaaaagtttaccaggtaccaggaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)