BAC Information

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BAC

Clone NameMSMg01-278L22
Chromosome11 (Build37)
Map Location 121,271,280 - 121,271,550
singlet/doubletsinglet
Overlap genenone
Upstream geneNploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b
Downstream geneBC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278L22.T7 (MSMg01no278_l22.b1)MSMg01-278L22.TJ (MSMg01no278_l22.g1)
ACCAG416293AG416294
length734736
length of high quality
(start - end)
275 (45 - 319)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no278_l22.b1 PHD_FILE: MSMg01no278_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:10 2005CHROMAT_FILE: MSMg01no278_l22.g1 PHD_FILE: MSMg01no278_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCTGAATTTAAGACCACCTACATTGGTGCAAACCTATGTTTGCT
ATTGTAGCCAGTGTGTAGTCAGTGTGCCATAAAAAGGCCAGAGTGAAGGA
AAGAACACCGGACCCTGACGACTAGACCTCAAGACCAAGACCAAGGAACA
GAATTCCACAAATCCTTGAACATGAAATCCCACCAACCTGGAAGCTTGCC
CCAAGACCAGGTCACAGAATTCCACCAATCTTAGGCTTCCCTGGAAAGCT
CCTCCCACGCCCTAGAAACCCTATATAGAGCCTGCCATCTGCCCAATTCC
CCGATGCTTTNCATCAATTAGAGGCGANAGCCACCTGTAACCTCGTGGTT
TTCTACCCAGCTCCTTTGTTCAAAAAAATAAAGACTCTGAGACTTAGTAT
TTCATAAATAAGTGCTTAGGTCAAAAGAATTGTTCCCTGACCAGCTCATA
ACTTAATTACCTGTTTATTCTATCCTAAGTCCCGCCACCTGTTTGGTTCT
CTCTCCCCAGGTTCGGTTTATTGTAAGAATGCTACATGGCTATCTTCTCA
GTTTCATGAATCTGTCTCTTCAGAGTTCAGGGCAAATCTCCCCAGCTTGT
GACTCTTTCCCAAAATCCCCCAGGCCTTCTCTGCCAGAACTCCCACCTCC
TTTTTCCTGCCTCAGCTCATTGGCCATAGGTTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTTTCCAGTCCTGAACTGTCTTCCTT
TCCCTTGGCCACACGTGTGTGCTTTCCTGGGCATCACTCGGGTCTTCCTT
TTCCTCTGCCGCAGGTGAGTGCTTTCTTGAGTTATCACTCAGGCAGTTCT
TCTCTGAGGTAAATGAGCTGTGTGTGTGCATCTACTTTACATTTGTTTCT
TCAATCCTTTGATGAACTTCATGACTGTTCTTCTAAATTCTGTGTCCATG
GGTCCATCTTGGTAATTCTCATTTCTATAGACCTGGTGGATCTTGATGGA
TAGATTGGTGTTTTTCTACACCCNTCTGCCCCAGAAATAAGAAAAATGGA
ATGCAAGTGGAACAAACTGGATCAGATAGATTTACCCTATATACGCCTAG
AGAGTGTGAGGGCGGCACAGATGGCCACAAAGTTAGACTAGCATACAGGC
TGTGTGGCTGAGGCTATGGGCCTTGGGGAAGGAATTGACACAGGCAAGCA
GGGCTTCAGGAACTTACCAGACTGGGCCAGCACACTAGATGTGCAACAGG
CTAGGTCTGTGGCTGGTGAAGGTACAAGCAGGCTAAGGTCCAAGGAACTC
ACCAGACTGGATCAGAACATAGGATGTCTGACCTAGCCTAGGTCTACAGG
TCAGGTATAGTATGAATAGGCTAGGGTCAGGTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_l22.b1 MSMg01no278_l22.b1 CHROMAT_FILE:
MSMg01no278_l22.b1 PHD_FILE: MSMg01no278_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:10 2005
         (275 letters)



>mm_chr11_121271076_121271750
          Length = 675

 Score =  485 bits (251), Expect = e-142
 Identities = 266/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctctgaatttaagaccacctacattggtgcaaacctatgtttgctattgtagc 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctgaatttaagaccacctacattggtgcaaacctatgtttgctattgtagc 264

                                                                       
Query: 65  cagtgtgtagtcagtgtgccataaaaaggccagagtgaaggaaagaacaccggaccctga 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 265 cagtgtgtagtcagtgtgccataaaaagaccagagtgaaggaaagaacacctgaccctga 324

                                                                       
Query: 125 cgactagacctcaagaccaagaccaaggaacagaattccacaaatccttgaacatgaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgactagacctcaagaccaagaccaaggaacagaattccacaaatccttgaacatgaaat 384

                                                                       
Query: 185 cccaccaacctggaagcttgccccaagaccaggtcacagaattccaccaatcttaggctt 244
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccaccaatctggaagcttgcctcaagaccaggtcacagaattccaccaatcttaggctt 444

                                          
Query: 245 ccctggaaagctcctcccacgccctagaaac 275
           |||||||||||||||||||||||||||||||
Sbjct: 445 ccctggaaagctcctcccacgccctagaaac 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)