BAC Information

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BAC

Clone NameMSMg01-278M18
Chromosome11 (Build37)
Map Location 86,210,705 - 86,210,898
singlet/doubletsinglet
Overlap genenone
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
Downstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278M18.T7 (MSMg01no278_m18.b1)MSMg01-278M18.TJ (MSMg01no278_m18.g1)
ACCAG416331AG416332
length709711
length of high quality
(start - end)
189 (126 - 314)194 (124 - 317)
definitionCHROMAT_FILE: MSMg01no278_m18.b1 PHD_FILE: MSMg01no278_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:15 2005CHROMAT_FILE: MSMg01no278_m18.g1 PHD_FILE: MSMg01no278_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATTACACTCAGTGGAGATTTTTCCACATATATTTAGGAAGTC
TAAAGAAGTCATGATCACCCACTTAGAGCTTAATGATACTAATATAAATT
ACAGAACACCATGGGGTGAGAAAAAAGGGCTGGAGAAATGGTTCAGCTAT
TAAGAGAACTGGCTGTTCTTCCAGAGGACTGGGGTTCAATTCCTAGCACC
CATAAGGCAGCTCACAACTGTCTCTCACTCTAGTTTGAGGGATCTGACAC
CCTCACACAGACACACATGCAGGTAAAACATCAATGTACATAAAATAAAA
CTATATCTTTATACAACCCCACCCCCGAATGAGTAAATAAATAAATAAAA
TACACAACTATAATCTTAGACACTTGAAATTGCCTCGCTGGGTGGGCATG
GTGGTACCTGAGCACCAGTTTACCAAGTACCAGACAATGAAACAATGAAT
CTTGTTCTGTTGGTGACCAAGAAGCATATTTTACATGTAACAGGACAGAG
TAGAGAACGGCGAGACTTTCTTTTAGGTGACATGAAGCTGGAGGGTGAGT
TAAGCACCTCCAGTACTTGTAGCTACTGAGGAGTAAGACTGTGGCCAGAC
ATGGAAGCTCACACCTTTATTTGAAGCACTCACTTGGGAGGTAGAGGCAA
GAGGATGAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGCCAACCTGAGATAATTAGA
GAGGGCCTTTGGGGAGTGGCCTGCCCATGTTTACAACAGCCCTATTTTTT
TTCTTATTGGCAAGAGCTCAAATTACACTTGACTAGGCTTCACAAGAGAT
GACAATTATGACTGGCCATGCTCATATCTCTAGCCGGTGAAAATTCTACC
TATCCACCCGACTAAGTGGGCAGTGAGTCACATGACCCTGATCACAGTTA
TCTGGATACCTGCCCGATGTGTGGCTATAAACCATATCCAGCAACCTTTG
TCCTGTGNNGTTTGTTCTTAAGCGATAAGCCGAAGTCAAGCCTTCTCTCT
TGGGAACCTGCNGTGAGAAACATAGTAAAACTTCGGGTGGGGGGTGGGCT
AAAACCAGAAGACCATAGAGATGCAGAGGCTAGAGGGGTCAGTTGTTTGC
AGTCCGGTTGAGAAGGCTAGTGAAGAGGGGAGGTAGGCTGAGTGGGAGTT
CAGGAGGGCCCAAGAGAGAAAGGCAATGGCGTTCTCTAGTGCTCGGCTGC
AGGCTGCCCAGCTCAGCTGGCCCAGGTTTTTGATAGACATAGATTTCCTG
AGTCTTCCTTTTGACCAGCCTAGGAGTACCATATCTTTAGTAATTTGACT
GATTCTAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_m18.g1 MSMg01no278_m18.g1 CHROMAT_FILE:
MSMg01no278_m18.g1 PHD_FILE: MSMg01no278_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:15 2005
         (194 letters)



>mm_chr11_86210505_86211098
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccatgtttacaacagccctattttttttcttattggcaagagctcaaattacacttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cccatgtttacaacagccctattttttttcttattggcaagagctcaaattacacttgac 335

                                                                       
Query: 61  taggcttcacaagagatgacaattatgactggccatgctcatatctctagccggtgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 taggcttcacaagagatgacaattatgactggccatgctcatatctctagccggtgaaaa 275

                                                                       
Query: 121 ttctacctatccacccgactaagtgggcagtgagtcacatgaccctgatcacagttatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttctacctatccacccgactaagtgggcagtgagtcacatgaccctgatcacagttatct 215

                         
Query: 181 ggatacctgcccga 194
           ||||||||||||||
Sbjct: 214 ggatacctgcccga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)