BAC Information

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BAC

Clone NameMSMg01-280D24
Chromosome11 (Build37)
Map Location 48,893,563 - 49,012,309
singlet/doubletdoublet
Overlap geneOlfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik
Downstream geneZfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280D24.T7 (MSMg01no280_d24.b1)MSMg01-280D24.TJ (MSMg01no280_d24.g1)
ACCAG417390AG417391
length748751
length of high quality
(start - end)
237 (131 - 367)238 (132 - 369)
definitionCHROMAT_FILE: MSMg01no280_d24.b1 PHD_FILE: MSMg01no280_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:03 2005CHROMAT_FILE: MSMg01no280_d24.g1 PHD_FILE: MSMg01no280_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,012,079 - 49,012,309)(48,893,563 - 48,893,797)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGCCAGTCAGACACAGAGGAAGTCAGGTGTACAGGGAATGAATGAG
AGGTAATGAACCATGTGACATTTGTCGACCAGATAAACTGGTTATTAAGT
TATACAAGCCTAAGGTATAAGGACTAAGCTTTCATAAATAATAAAAGTCT
CCACGTCATTGTTAGAGGCTGCCAGGTCGAGACAGGCTGGAGAAATATTG
GAGTCTTAGTCACCAGACTGTGACATTATTAGGAGGTGGCTGAACCTACT
GAAGGAAGTTAGGCCATTGAGAATGTGTATCTGCTGGCTCTCTTTGCTTT
CTGGCTGACTTGTTGGGGGTAGCCTCTNNACANNACATGCTCCTACTACA
ATATACTATGCTGCCACAGACNGATCTAAAAAAATNAAAACAAGAAGTCG
TGGATTACAACTTCTGAAACTGTTAGCCAAATTAAGCCATTCTTCTCTTT
AATTTGATTTAGCTTAGGTATTTCTCATCGTGACAGAAAACAGACTAACA
CACATTGTGAAATGACATAGTGAAAGGTGATTCGTCGTTGTATTAATTAA
GTAAAATTATTTTTAGTAATATTTTTTGTGAGCGCCCGACTCACCAGCAA
AGCAGACGCCACAACAGGATCCTTCTGCACACGTTTATTGAGAGAGCTTG
ATTGCAGAGGTGAAAAGACCCTGGAACCAGAACTGGTGCTGCTTATAN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGTTTTCATGAGAATGACAT
AGGTAAAGGTCCAGACAGAGATTTCACCCGGATGATTATCAATATGATCA
AGGAAAAAGGACTCAGTCAGATAAATGACAATCAGGGGTCAACAAAGGGC
ATGATAATGGAAGTGAATAAAAAGAAATACTGAAGAAACCTGTGTCTTAT
ATGAGGCTAAAATTATTTTTTTTTGTAAATCAAATGCTCAGTGGAAAGGC
ACATTAACACAATGGATCACCTGAAAGAGAGATTATCTGAAGTTTTAGGT
ATATATAGATAATATATTANTTGAATACCTGNTCAAGCCCGGCCATAATA
ATTGAAAAACCTATGAATAAACCATGTGTAAAAAAAAAAACAACAGAAAA
TAGAGGAAGAAGAACTCCTTTCCCATAGCATACAATATATATTCAATGAA
TCCTAGCAAAAATGTCCCCCAATTAAGGGACAGCAAGGCACATCTAGATA
CATGTAGAACTCCAGATATACAGGGCAGAAAAAAGAAACTCCTGAAGTCA
TACTATAGTGAAAATCCAGAATGTATTAAGCATATCATTTTGTACACTGT
CAGAGAGAAACAGGAAGAACTATAANATATGCCCTTCAGAGTAGCAAGTG
ACAGAGGGCAGAAGAATCTTTGAAAACTAGAGGCCCTAACATGATCTGGC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_d24.b1 MSMg01no280_d24.b1 CHROMAT_FILE:
MSMg01no280_d24.b1 PHD_FILE: MSMg01no280_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:03 2005
         (237 letters)



>mm_chr11_49011879_49012514
          Length = 636

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%), Gaps = 1/232 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agataaactggttattaagttatacaagcctaaggtataaggactaagctttcataaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agataaactggttattaagttatacaagcctaaggtataaggactaagctttcataaata 372

                                                                       
Query: 61  ataaaagtctccacgtcattgttagaggctgccaggtcgagacaggctggagaaatattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ataaaagtctccacgtcattgttagaggctgccaggtcgagacaggctggagaaatattg 312

                                                                       
Query: 121 gagtcttagtcaccagactgtgacattattaggaggtggctgaacctactgaaggaagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gagtcttagtcaccagactgtgacattattaggaggtggctgaacctactgaaggaagtt 252

                                                               
Query: 181 aggccattgagaatgtgtatctgctggctctctttgctttctggctgacttg 232
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 251 aggccattgagaatgtg-acctgctggctctctttgctttctggctgacttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 636
Length adjustment: 9
Effective length of query: 228
Effective length of database: 627
Effective search space:   142956
Effective search space used:   142956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_d24.g1 MSMg01no280_d24.g1 CHROMAT_FILE:
MSMg01no280_d24.g1 PHD_FILE: MSMg01no280_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:03 2005
         (238 letters)



>mm_chr11_48893363_48894000
          Length = 638

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattatcaatatgatcaaggaaaaaggactcagtcagataaatgacaatcaggggtca 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 atgattatcaatatgatcaaggaaaaaggactcagtcagatgaatgacaatcaggggtca 260

                                                                       
Query: 61  acaaagggcatgataatggaagtgaataaaaagaaatactgaagaaacctgtgtcttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaagggcatgataatggaagtgaataaaaagaaatactgaagaaacctgtgtcttata 320

                                                                       
Query: 121 tgaggctaaaattatttttttttgtaaatcaaatgctcagtggaaaggcacattaacaca 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tgaggctaaaattatttttttttgtaaatcaaatgctcattggaaaggcacattaacaca 380

                                                                  
Query: 181 atggatcacctgaaagagagattatctgaagttttaggtatatatagataatata 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggatcacctgaaagagagattatctgaagttttaggtatatatagataatata 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)