BAC Information

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BAC

Clone NameMSMg01-280E14
Chromosome11 (Build37)
Map Location 117,439,407 - 117,439,686
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
Downstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280E14.T7 (MSMg01no280_e14.b1)MSMg01-280E14.TJ (MSMg01no280_e14.g1)
ACCAG417418AG417419
length758758
length of high quality
(start - end)
241 (127 - 367)282 (444 - 725)
definitionCHROMAT_FILE: MSMg01no280_e14.b1 PHD_FILE: MSMg01no280_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:05 2005CHROMAT_FILE: MSMg01no280_e14.g1 PHD_FILE: MSMg01no280_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTGTAAAATTTCACACAACAGCAGCTGTCTCAGGGCTGTGAGACTC
ATTGAGACATCAGACCCCTGTGCCCAATGTAGAGGTAGAGTGGAACATAT
ACCCAAGTTACAGCCCCCAGAAGGAAGGCAGATGCTCACCATAAAAGACT
TGAAGCCCATGGCTCAGGCACAGTAAACCGACATCCTGTTGGGGAAGGCC
TTGGGTAGCCCTCCTGTACCCTAGGGGCCTGGACCCAGCAGCCTCTCTGA
GGACAGCCTACTGTGGCACTCTTCTGCATGCAGTGGTCTCTTTCTGTGGT
AGAGGAAGCATTTCTTTTCCTCCCTACGATCTAGTGCCTTTGGTGGCTTT
ATATTTACAACTGGGGACAAACTAGGGCCAGAGTGCACGCCCCTCCCCCT
GCGCTTACTCACAGTCCAGGGGGACCTGGAAATCTCACTGAGAAGTGGAA
GGACAGTGGTGGCTTTTATTAGAGAGCTTGCCCCTCAGAGGGTCTGGTGG
GAGCTTTGTCCCTTTGTACACACACATACAAACACACACACACATACTCA
CACACATATACTTACACACTCACCATCCCACTTGTTTCGCACACCAGTCT
CTCGGGCTCTGGGCGCCCTAGGGGAAGCCTCATATGGTCTTGAAGAGGGA
AGGTCTGCCCCGTGGCGGTAGATGGAGTTTCTGCTTCTCTCTATATTTGG
CCAGCAGC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCCTGGGACCCACATGGTAGA
AATAGAAAACTGACTTTCAAAGTTACCCCCTGACCTTCATACAACAGCCA
TAGCAGACATCACCCCCTCCCCAACACACACATATATACACACACAGACA
CAGACAGATACACACACAAGCTCACATATACACACACAGACACAGATACA
CACACAGACACACGGAAACAGACAGATACAGACACATACAAACACACACA
CACACACAGACATACACTGGCACACATACACACAGAGACACACAAATACA
CACACACACACACAATTTCTTATTGACACACCCCCCCCCAATAAATATAA
AAAAATATATATTCAAGGAAAACCCGTGTGTGAAGAAAAGAGTGTGTGAG
CAGCAGGCTACCCTTGAGGACTGAGGAGGCTCAGTAGTCCACTCTGCTGC
CTAATGACCAGGAAGCCTCCTGCCCACCAGGCGCCTGGAGTTTGCTGCCT
GCAGGCCTGTGATAAAGAACAGCTATGTGAAGACAGGAATAGAGCCATCA
CCTAAATGACTCCAGCCCCCCCACCCCCCGTGTCCACAGTGAGCTCAGGA
CTCAGGGCCCCATGGTCATCTCTGGGGGCCTCTGCAACATCTGAACACAG
CGGACAGTCCAGTGTCCCTCCTCCCACCCTCCAGTCCCATCCTCTCATCC
AGGGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_e14.g1 MSMg01no280_e14.g1 CHROMAT_FILE:
MSMg01no280_e14.g1 PHD_FILE: MSMg01no280_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:05 2005
         (282 letters)



>mm_chr11_117439207_117439886
          Length = 680

 Score =  511 bits (264), Expect = e-149
 Identities = 277/282 (98%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtgagcagcaggctacccttgaggactgaggaggctcagtagtccactctgctgccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtgtgagcagcaggctacccttgaggactgaggaggctcagtagtccactctgctgccta 421

                                                                       
Query: 61  atgaccaggaagcctcctgcccaccaggcgcctggagtttgctgcctgcaggcctgtgat 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 420 atgaccaggaagcctcctgcccaccaggtgcctggagtttgctgcctgcaggcctgtgat 361

                                                                       
Query: 121 aaagaacagctatgtgaagacaggaatagagccatcacctaaatgactccagccccccca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 360 aaagaacagctatgtgaagacgggaatagagccatcacctaaatgactccagccccccc- 302

                                                                       
Query: 181 ccccccgtgtccacagtgagctcaggactcagggccccatggtcatctctgggggcctct 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 301 -cccccgtgtccacagtgagctcaggactcagggccccatggtcatctctgggggcctcc 243

                                                     
Query: 241 gcaacatctgaacacagcggacagtccagtgtccctcctccc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gcaacatctgaacacagcggacagtccagtgtccctcctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 680
Length adjustment: 9
Effective length of query: 273
Effective length of database: 671
Effective search space:   183183
Effective search space used:   183183
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)