BAC Information

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BAC

Clone NameMSMg01-288M15
Chromosome11 (Build37)
Map Location 45,875,588 - 45,875,872
singlet/doubletsinglet
Overlap geneAdam19
Upstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624
Downstream gene9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288M15.T7 (MSMg01no288_m15.b1)MSMg01-288M15.TJ (MSMg01no288_m15.g1)
ACCAG418519AG418520
length740744
length of high quality
(start - end)
234 (414 - 647)286 (71 - 356)
definitionCHROMAT_FILE: MSMg01no288_m15.b1 PHD_FILE: MSMg01no288_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:57 2005CHROMAT_FILE: MSMg01no288_m15.g1 PHD_FILE: MSMg01no288_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGAGCGCGGAATTCC
TGCTTTATCAAAAGGGGCCTTTTCATCCGTCAATCAATTATAGATCATCT
GGCATGCCCTGCTCACCCATGACTAGCAGCTCTCTTTAGATAAGAAACCT
GTTGCGGCGCTGAGACTGTCTATGTACTTTGTAGAACGTACTTAGTACTT
TTTGTGTCTATGTAGAAATGACACTGCTGTGCACGTGGGGAGGTTGTGAA
TCCCAGGGTAGGCCATCTGCCTCCATCTCATGGCTGATCTCAGCTGCAAT
CTCTAGGGGAATCATGTTTGAAGAAAGGATAAAGAGCAGCTAGCTAGCAC
TGTTTCTTGGTTAGTGCGAAGTGCACGGTTTTCCAGATTGAAATGCACTA
TGAGGAGAACCGAGTTAGAGAAAAAATCAAATGTTAGAACCTGGTTTGGT
CATGCATGCCTATAATTCCAGCACTTGGGATCTAAGGCAGTGAGATTGGG
TTCCAGGCCACCCTGGGCAGACCGTGTTTTTCGAAGGGTTGGGAAATGGT
GCACTGTTGTCTCTGGCCCACATCAGATAGCTCACAACCACATGTGATGT
ACATACTCCGGCTCCTGGGGATCTGATGCCTTCTTTTGAACCCCAAGTGA
TCTACACACGTGTGCACACATACACACATATATGTTTCCTTAATAAAATA
TTTTAAGACTGATGGAAAAAAAGCACATTTGGGGGGAAAA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGTGTTTCTCATCTGTTTATCTTTCCAG
ATTCCAGGGCCACAATTGCCTGAAGTCTTTCCTGACACTTCCTTCCCTGG
CTTTAATCTTGCTCCTATCTGTTGCCCAATAAACCACAGGCCATTTGGCC
CCTAAGAGATCATAGAAACGAGTCCTTCAAAGTAGGCACAGTGCTTATCC
ATGCAGTGCTAGGACTGGGAAGGTGAAGCAGCATAGTCTCCACTTAGAGG
CCAGAGTAGGACACATAAAAGGTCCTGCTGAAAAAGAAAGTTAGCCCTTC
TCCACTTTTTTGTTCCTCCCCCCCCCCACTAAAACTGGATTTGTAAATGA
GGAAGCTCAACCACAGCAAAAAGACACATAATACGTTACTGTCACGCAAC
TACCATATTTCCCTTTTGAGAACATCCTCAATATGAGTCTGCTTGGTGGA
CCATGTTCTGACTGCCTTGGCAACATCTGTGTATTTTGCTACTGCTCTGG
GCCAAGGAATCAGGAAGATATTTTGAGATATATAACCTAATCCTAGCTCC
CTATCTTGCCTCTTATTAACAAAAAATAAAAATAAAAAAAGAAAAGAGAA
AAAGAAAATCGCTGGGTACCCATGACACACAGTGTGATCTTTGCATTTTC
GAAATGGAAGCAGGTAGATTAAGATTTACATACAGGTCAGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_m15.g1 MSMg01no288_m15.g1 CHROMAT_FILE:
MSMg01no288_m15.g1 PHD_FILE: MSMg01no288_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:57 2005
         (286 letters)



>mm_chr11_45875388_45876073
          Length = 686

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtgtttctcatctgtttatctttccagattccagggccacaattgcctgaagtcttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 485 tgggtgtttctcatctgtttatctttccagattccagggccacaattgtctgaagtcttt 426

                                                                       
Query: 61  cctgacacttccttccctggctttaatcttgctcctatctgttgcccaataaaccacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctgacacttccttccctggctttaatcttgctcctatctgttgcccaataaaccacagg 366

                                                                       
Query: 121 ccatttggcccctaagagatcatagaaacgagtccttcaaagtaggcacagtgcttatcc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 365 ccatttggcccctaagagatcatagaaacgagtccttcaaagtgggcacagtgcttatcc 306

                                                                       
Query: 181 atgcagtgctaggactgggaaggtgaagcagcatagtctccacttagaggccagagtagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atgcagtgctaggactgggaaggtgaagcagcatagtctccacttagaggccagagtagg 246

                                                        
Query: 241 acacataaaaggtcctgctgaaaaagaaagttagcccttctccac 285
           ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 245 acacataaaaggtcccgctgaaaaagaaagttagcccttctccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)