BAC Information

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BAC

Clone NameMSMg01-289G13
Chromosome11 (Build37)
Map Location 70,495,811 - 70,495,991
singlet/doubletsinglet
Overlap geneCamta2
Upstream geneTnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7
Downstream geneAI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289G13.T7 (MSMg01no289_g13.b1)MSMg01-289G13.TJ (MSMg01no289_g13.g1)
ACCAG418967
length730754
length of high quality
(start - end)
---182 (131 - 312)
definitionCHROMAT_FILE: MSMg01no289_g13.b1 PHD_FILE: MSMg01no289_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:43 2005CHROMAT_FILE: MSMg01no289_g13.g1 PHD_FILE: MSMg01no289_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCCACAAAATTCTCCGNNGGAAAGTTGGNGNAACAGATCTTG
GAAANCCACCTATCACCCCCAAAAAAGAAGTCATGCTTGTCTCTGCAGTG
GGGGCCTTGGTAAGTGACCCCCATACTCTGGAGCTCTTTTCCCAGCTAGC
CACATGGCTTAATAACTGCCTCCATGAGATTTGCATACTAATTTGCAAGT
CTTTGCATGCCCGATGAGCAAAGAATTCCTGATCTGGAAGCCCAGGCCCC
AGAAATGCATGATTATTATTCTGGAGGNCCACAGCCCTTCTGCCCACTGC
TTTTTGTTTTTCTCCCACCCCACCGCATGTAACCAGTTACTTCCAGTCTT
TGCCCCCCCCCTCCCCAAAAAACAAAAAAGTACTTTTGTTCAGGCTTTAG
CTACTGCTATCAGCTACTGCCTCAAGCCAGGACTCCTCCCCCACTCTGTT
CCTCTAGTCCTGTTTATTTTGAGGAGAATTATAGGTATGGTAGTGTGAGA
CCCACTTTTGATGCCTTCCCAGAGGCCATAATCACTATTACCCTGATAGG
TGTGTGGCTTTCCGTTGTTCTTCCCTTAACTAATATCTTTCTTTCGTACT
TCTTTCTTTTTTTAATTACCCCTTTTCTTTTTTCCCTTTTTCCCCGTATT
TATAATTTACGTTTTCTTTTCCGTTTCTCGTTTATACTCTATTTCTTTTT
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_g13.g1 MSMg01no289_g13.g1 CHROMAT_FILE:
MSMg01no289_g13.g1 PHD_FILE: MSMg01no289_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:43 2005
         (182 letters)



>mm_chr11_70495611_70496192
          Length = 582

 Score =  342 bits (177), Expect = 6e-99
 Identities = 180/181 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgcttgtctctgcagtgggggccttggtaagtgacccccatactctggagctctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgcttgtctctgcagtgggggccttggtaagtgacccccatactctggagctctttt 322

                                                                       
Query: 61  cccagctagccacatggcttaataactgcctccatgagatttgcatactaatttgcaagt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagctagccacatggcttagtaactgcctccatgagatttgcatactaatttgcaagt 262

                                                                       
Query: 121 ctttgcatgcccgatgagcaaagaattcctgatctggaagcccaggccccagaaatgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgcatgcccgatgagcaaagaattcctgatctggaagcccaggccccagaaatgcat 202

            
Query: 181 g 181
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)