BAC Information

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BAC

Clone NameMSMg01-289H13
Chromosome11 (Build37)
Map Location 70,495,715 - 70,495,997
singlet/doubletsinglet
Overlap geneCamta2
Upstream geneTnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7
Downstream geneAI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289H13.T7 (MSMg01no289_h13.b1)MSMg01-289H13.TJ (MSMg01no289_h13.g1)
ACCAG419012AG419013
length735720
length of high quality
(start - end)		---285 (135 - 419)
definitionCHROMAT_FILE: MSMg01no289_h13.b1 PHD_FILE: MSMg01no289_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:47 2005CHROMAT_FILE: MSMg01no289_h13.g1 PHD_FILE: MSMg01no289_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCG
CNGGAATTCATCTTGTTTACACGCTACCTTTGGATGAGTTGTGTCGGTGA
TTGCAGGAAAAAAGGAGTGTATCGACTGTCTTGCCCANAATGCTTGGTCC
GTGAAGGCTGTAGAAATCCTGTATTGATCTTGACTTCATCTTTACTCTTT
CTCTTTCTTGCAGGGAGCATATCACTGAGTCCCATACGTCACCCCTAATA
CTTCATTTCTGTAATTCTGAGTGATCACCCACTCCCGTGTGTGTGCTAAG
GAAAATAAACCATGCCCGCTTTGATCGTTCAAGCTCTTCCTTATGGCAAT
AAACAACCCTGAGCCCCTTCACCCAGTTCTGTTTTAGCCGACTGCCCACC
ATGTACGTGGGCCTTCACAGATATGTGTCTACCACCCCCCCCTACTATAT
GTACCTCCCACTCTACCACATATTCTCCCACCCCCTCTTGCTATTCTCTT
AATTGCAACAACATAATTATTGTTCTGGAAATAGAAATCTGTGCTCTCAA
GGAAGCTACTGTGCCAGTGATGATCGAGGACCAATTTTTAATCAACTTTC
CTAACATTTAAGTGAGTGTCGTGAGAGTGAGTGTGTGTGXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGTGGAACAGTTGGTGCAACA
GATCTTGGACACCCACCCTTTCTACCCCAGCACCCAGAACTCATGCTTGT
CTCTGCAGTGGGGGCCTTGGTAAGTGACCCCCATACTCTGGAGCTCTTTT
CCCAGCTAGCCACATGGCTTAGTAACTGCCTCCATGAGATTTGCATACTA
ATTTGCAAGTCTTTGCATGCCCGATGAGCAAAGAATTCCTGATCTGGAAG
CCCAGGCCCCAGAAATGCATGACTACAATCCTGGAGGTCCACAGCCCTTC
TGCCCACTGCTTTCTGTTTCTCCTCCCACTACACCGCATGCCACCAGGCA
CTTCCAGCCTTTGCATTCCCCACACCCCACCTACTTTTGTCCTTTTGCTC
AGCCTTTAGCTACTGCTATCAGCTACTGCCTCAAGCCAGGACTCCTCCCC
CACTCTGTTCCTCTAGTCCTGTTTATTTTGAGGAGAAACTAAAGGGAGGG
GAGGGGGAGACCCACTTTTGATGCCTCCCAGTGGTCATAATCAGTATTAC
ACTGTAGGTTGTGTGTGTGCGTGTGTGTGTGTGTGACCTATCATGGTACT
GACGACCCGCCTTCTCAGTTTAGTATCCATACTAGCCATGTTGTAATCCA
CTATGGTATAATACTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_h13.g1 MSMg01no289_h13.g1 CHROMAT_FILE:
MSMg01no289_h13.g1 PHD_FILE: MSMg01no289_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:47 2005
         (285 letters)



>mm_chr11_70495515_70496199
          Length = 685

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaactcatgcttgtctctgcagtgggggccttggtaagtgacccccatactctggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cagaactcatgcttgtctctgcagtgggggccttggtaagtgacccccatactctggagc 424

                                                                       
Query: 61  tcttttcccagctagccacatggcttagtaactgcctccatgagatttgcatactaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcttttcccagctagccacatggcttagtaactgcctccatgagatttgcatactaattt 364

                                                                       
Query: 121 gcaagtctttgcatgcccgatgagcaaagaattcctgatctggaagcccaggccccagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcaagtctttgcatgcccgatgagcaaagaattcctgatctggaagcccaggccccagaa 304

                                                                       
Query: 181 atgcatgactacaatcctggaggtccacagcccttctgcccactgctttctgtttctcct 240
           ||||||| || ||||||||||||||||||||||||||||||||||||||| ||  |||||
Sbjct: 303 atgcatggctgcaatcctggaggtccacagcccttctgcccactgctttcagtaactcct 244

                                                      
Query: 241 cccactacaccgcatgccaccaggcacttccagcctttgcatt 283
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 243 cccactagaccgcatgccaccaggcacttccagcctttgcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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