BAC Information

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BAC

Clone NameMSMg01-294D16
Chromosome11 (Build37)
Map Location 69,673,615 - 69,673,927
singlet/doubletsinglet
Overlap genenone
Upstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1
Downstream geneLOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294D16.T7 (MSMg01no294_d16.b1)MSMg01-294D16.TJ (MSMg01no294_d16.g1)
ACCAG422457AG422458
length729804
length of high quality
(start - end)		321 (51 - 371)162 (80 - 241)
definitionCHROMAT_FILE: MSMg01no294_d16.b1 PHD_FILE: MSMg01no294_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:52 2005CHROMAT_FILE: MSMg01no294_d16.g1 PHD_FILE: MSMg01no294_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCAAATCTGGTAAAAATTCTGAGTTCACAGAGGAAATAT
AGCAGTGCATATAACAAATAGAGAAAGATCCTTATCTAAGAACTACGCAA
GAAAACAAAGAAATACCAGTGCTATTTTAAAAGCAGGGAATAATGACAGA
TCATGCACAGACATCATCAGATCAGATTGGACTGACAGATTGCTTTACAA
CTAACGTACATCGCACCTACTACATGCCTACACTGTTCTGGGACTTAAAA
CACCAACAGGAGGAGACAGGCCGGTTTCCTACCCTGCAGAGCCCACAGTG
TAATAAGAATGACAGACTTAGGTGGATCCCCCCACACGCCCGTCTACTTG
GTGGATCAGAGAAGGGGTAGGAAATGATATGTGAAAAATAACAAAGTGAT
TTAGCCAGGAATGCTGGAACATCCACATGTTGCTCGATAAACAGAGGTGA
AGGAATGGCGGCTGCCGTGTTCATGCATGCATTCTTCCTTGGACCGAAGC
CTTGAAGCTTCCTCTCTGGGACCTCAGAATAAAAGGGAGAAAGAATGACT
CTCCTTGAAGCACTCTCCAGGATCCCAGAGATCCACTTTTCTTTTTTTCC
AATATTTATTTATTCATTTTATGTATATGAGTACACTGTAACTGTACAGA
TGGTTGTGAGCCACCATGTGGTCGCTGGA

NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGCCC
TTGAACTCAGAAATCCACCTGTCTTTGCCTCCTGAGTGCTAGGATTAAAG
GTGTGTGCCACTACTGCCCAGCCCTGAGGAGAGTTTTTTGTTTTGTTTTG
TTTTGCTTTTTGTTCTTTCAAGACTGGGTTTCTCTGTATAGNCCTGGTTG
TCCTGGATCTCACTCTGCAGACCAGGCCTCATCTCAGAAATCCTCCTGAC
CTCTGCCTCCCCAGTGTTGGTATTAATGTTTTTTTTGACCCAAGTCCCTG
GTATATCTATTTAACGGAATATTTTGATGATTTCCCCCCACACCCCCCCC
AGTATTGTTTTTATTGTGAATGTTTTGGTTTGTTCCCCCCCCTAAAAAAA
AAAAATAAAATATTTTGCGGGGGGGGTGGGGGGCCTTCTCCCCTTCTCTC
TTTGTCTTTTTTACTAACATTTCCTTTCTTCTCGTGATTTCCTCCTCCCT
CTCTGTAACAATCATCCACTTTCCTCTTCTTTCTACTTCCCTTTCTTTTT
TTTTCTCTTTGCTCTCATTTGACCTCATCTATCTATGTCCTTCTCCTCTT
ATTTTCTTCCTTCCACTCCCACCCTTTTCATATCCTAATATTTTTCCCCA
TTTCTTTTTTTCTTTTCTCCTTATTATTTTTTTCCTTTTTCCTTTTACCT
TTCTTTGTTATTTTTTTATTCCCCTTTTTTTTTTCTGCTTATTTCTCTCC
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_d16.b1 MSMg01no294_d16.b1 CHROMAT_FILE:
MSMg01no294_d16.b1 PHD_FILE: MSMg01no294_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:52 2005
         (321 letters)



>mm_chr11_69673516_69674236
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccaaatctggtaaaaattctgagttcacagaggaaatatagcagtgcatataa 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 412 gaattctccaaatctggtaaaaattctgaattcacagaggaaatatagcagtgcatataa 353

                                                                       
Query: 65  caaatagagaaagatccttatctaagaactacgcaagaaaacaaagaaataccagtgcta 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caaatagagaaagatcattatctaagaactacgcaagaaaacaaagaaataccagtgcta 293

                                                                       
Query: 125 ttttaaaagcagggaataatgacagatcatgcacagacatcatcagatcagattggactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttttaaaagcagggaataatgacagatcatgcacagacatcatcagatcagattggactg 233

                                                                       
Query: 185 acagattgctttacaactaacgtacatcgcacctactacatgcctacactgttctgggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 acagattgctttacaactaacgtacatcgcacctactacatgcctacactgttctgggac 173

                                                                       
Query: 245 ttaaaacaccaacaggaggagacaggccggtttcctaccctgcagagcccacagtgtaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttaaaacaccaacaggaggagacaggccggtttcctaccctgcagagcccacagtgtaat 113

                        
Query: 305 aagaatgacagac 317
           |||||||||||||
Sbjct: 112 aagaatgacagac 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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