BAC Information

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BAC

Clone NameMSMg01-294F10
Chromosome11 (Build37)
Map Location 57,653,309 - 57,653,599
singlet/doubletsinglet
Overlap genenone
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
Downstream geneLOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F10.T7 (MSMg01no294_f10.b1)MSMg01-294F10.TJ (MSMg01no294_f10.g1)
ACCAG422538AG422539
length767739
length of high quality
(start - end)
278 (47 - 324)294 (78 - 371)
definitionCHROMAT_FILE: MSMg01no294_f10.b1 PHD_FILE: MSMg01no294_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:00 2005CHROMAT_FILE: MSMg01no294_f10.g1 PHD_FILE: MSMg01no294_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACAGAGATCTTCCCGCTTCTGCTTTTATAGTGCTGGGATTAAGG
GGTGCAGCGCACCGCCACTCCCTTCCCCTGGGCCTGTTTTTAACTAAAAC
AAGTTTAAAAGTATTTTTGGTTTATGTGTTCAGGTTTTTCCTGTGCATGT
ATGTCTGTGTACCATTTGTATACCAGGTTCATGCTTGCCAGAAGAGGGTG
CCCATCACCCTGGAAACAGAATTACAGACGGTTGAGAGCTGCTGTTATAG
GTGCTGGGAATCTAACCTCGGACCTCTGGAAGGGCAGCCAGTGCTCCTAA
CTGCTGAGTCTTTTTTTCGTCTTCATACTTTCCCCTAAAAACAAACAACA
AATGAACACATTACCTTGCTAAAAGAAAACAAAAAATATCAAATGCGGGG
GGCCGCATTGAATTTTCCTGGGAACTGGTTGAACAGTGGGTTCCTGCCCA
CCATGGGCCTGGGAGCCATTATTGTGTTTATTTTTAATATTGTCCTTGGT
AGCATCCGTAAGATTTGAAACATAATCATTGTGACTCCTGCCATTTGAAT
TGTCCCATGTTTTTTTCGGTGTTCCGCTACCATCATGAATCCTCTTCCAA
CCCAGTGACTCAAATTGTTAAAGTCCCTTTTTTTATGTAAATTATTTTTA
CAAACGGTTTATTTCTGTAATTCTACAACTAATATTAACTCATTACATTC
CTCTTTTATTCTATCTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAATTCCCTAAATTCTCTAGT
ACTGCTAACAGCCTGGAACATAAAGCTTAGAGCTACCAGGAATACAGATG
TCAAACTATGGAAATGGTCTCATTAACTGAACCCCTGCAGCTTGGTGTAG
GTGGGAAATAGGTGTCAACCAAGACCTTCCTTCACCCAACAGCCCTTAGG
AAGAGGCTTCAGCCTGCCAGACTGATTATTTGAAAGAGATCCAGGCTACA
TTCGTCATCTCTCCCATCATGGTCAGCTGTAAACACACTTTAAAAGAGAA
AAACAAAAAGGGGATTTATTGTTCGACAATGCCACAACCCGCTTAGCCCT
GGGCTCACTGGCAGACGCCTTGGGAGAGACACTAAATTGTATAGCATTTT
CCATTTTTTCCCCCGAGAGAGTTTAAATCTCATGGGGCTCTTCTTCTTCC
CCTTTGCACACAGTGGGAAGGTCTTCATTAAAAAGCTAAGATGGGTGGAA
GGCCTTGCATGTGGAATGAAAGAGCACCCCCATCCTGCCCCCAAGTTCAC
ACTGCGTCTCCATCCTGGTGTGTTGTCCTGGGGAGAATTTTGCTCTGAAT
TACAGGGGGTGTAGGAAAAAACTCTGAAGAAATCCTAATCTTTTTTTTCC
CCGGGAACCGGGACTGTGGAATTGAACCTTGGGCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f10.g1 MSMg01no294_f10.g1 CHROMAT_FILE:
MSMg01no294_f10.g1 PHD_FILE: MSMg01no294_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:00 2005
         (294 letters)



>mm_chr11_57653109_57653802
          Length = 694

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaattccctaaattctctagtactgctaacagcctggaacataaagcttagagctacc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tctaattccctaaattctctagtactgctaacagcctggaacagaaagcttagagctacc 260

                                                                       
Query: 61  aggaatacagatgtcaaactatggaaatggtctcattaactgaacccctgcagcttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaatacagatgtcaaactatggaaatggtctcattaactgaacccctgcagcttggtg 320

                                                                       
Query: 121 taggtgggaaataggtgtcaaccaagaccttccttcacccaacagcccttaggaagaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtgggaaataggtgtcaaccaagaccttccttcacccaacagcccttaggaagaggc 380

                                                                       
Query: 181 ttcagcctgccagactgattatttgaaagagatccaggctacattcgtcatctctcccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagcctgccagactgattatttgaaagagatccaggctacattcgtcatctctcccat 440

                                                              
Query: 241 catggtcagctgtaaacacactttaaaagagaaaaacaaaaaggggattta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggtcagctgtaaacacactttaaaagagaaaaacaaaaaggggattta 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)