BAC Information

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BAC

Clone NameMSMg01-294F11
Chromosome11 (Build37)
Map Location 16,682,915 - 16,683,184
singlet/doubletsinglet
Overlap geneEgfr
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583
Downstream gene2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F11.T7 (MSMg01no294_f11.b1)MSMg01-294F11.TJ (MSMg01no294_f11.g1)
ACCAG422540AG422541
length739729
length of high quality
(start - end)
272 (53 - 324)286 (81 - 366)
definitionCHROMAT_FILE: MSMg01no294_f11.b1 PHD_FILE: MSMg01no294_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:00 2005CHROMAT_FILE: MSMg01no294_f11.g1 PHD_FILE: MSMg01no294_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTGATTTTTGATGTACCACAGATTCATAAACATAGAT
ATATTCCTACTGAATACAACCCCTTTTACCCATGTTTCCCAGAAAAGTCC
TAAGCCACCAAAATTGCCAGATGTAGCCTTCACAATGTAAACATTATGTT
TCAACAAGATGCTTCTGTTTTATTCTTTATTAATTAGATTCATCCTTTCA
AAATTTCATAAATGTGTACAACACATTCTCTGATCTCCCATCCATGCCTG
TCCGCTTTCCCTGACTGTAACGGGACCATTGCACATAACCGCAACTGCTG
AGTTTACCACCACATTGCCTAGATGTCCCCCCCCCCCCCATCTCTCTATT
TTCTGAAGATACTTTTATTCATTTGGGTGATAAAAAAAATAAGAATCGGA
GCTTTAGCTCGTCTTTTGTTTTAATTGTTATCCAGTCCGTCAATTATTGA
ATCAGTGCAAGCTCTCGGCTAGGCAGGATGAGTGGAATCTGCCAAGCCTA
GGCTATTTTTTACNCGAAGAAAACAGAGGCCTGGGGAATCAGATTCACCC
AGCAACACACGTGCTTCACTCTGGGTGCCCTGTTAAAGCACAAAAAAGTG
GTCTCAAACAGGGGAAGAGCAAACCCGATAAGAGAAAGTCACAGGTTGAA
CCAAAGGGTAACTGGAACTCCGAAATGAAACTTGCTCCA
NATTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATATGACAAGAATCTGTT
TTGCCTTTGTAGCCTTACCTTTTCTCCCCAAATATTACCCTGAGCTGCCA
AAAACTGAATGAGGGCTATTTTCAAACATGTGATGGTTTGTTTATGCTTA
GCCCAGAGAGTGGCACTATTAGAAGGTGTGGCCCTGTTGGAGTAGGTGTG
CCACTGTGGGTGTGGGCTTAAGACCCTCATCCTAGCTGCCTTGAAGCCAG
TCTTCCACTACCAGCCTTCAGATGAAGATGTAGAACCATGCCTGCCTGGA
TGCTGCCATGCTTTCTTCTTGTTGATCCCGCACCGAACCTCTGAACCTGT
CAGCCAGCCCCAATTAAACGTTGTCCTTTATAAAACTTGCCTTGGTCATG
GTGTCTGTTCACAGCACTAACGCCCTAACTAAGAAGGCTCACGTGAAACA
AGAAAGGAACAAATGAGTGTGGAAATCATCTGCTCCCCTCCACCACCACC
CACAGTCCTCCAGCCCCCCACCCCCTGCTATTATTTGAGCTTCATACTTT
TTCATTGATGAAGAAATGTTTGCCATTGTAATCACTGTAAATAATCTTGC
TGATTGGGAACTTTACCTAAAGTATCAATAAATCGATTTTTGAGTAGGAA
AATGTTTTGGTTTTTTTCCTTTGCATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f11.b1 MSMg01no294_f11.b1 CHROMAT_FILE:
MSMg01no294_f11.b1 PHD_FILE: MSMg01no294_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:00 2005
         (272 letters)



>mm_chr11_16682711_16683384
          Length = 674

 Score =  449 bits (232), Expect = e-130
 Identities = 260/270 (96%), Gaps = 2/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgatttttgatgtaccacagattcataaacatagatatattcctactgaata 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaattccttgatttttcatgtaccacagattcataaacatagatatattcctactgaata 415

                                                                       
Query: 65  caaccccttttaccca--tgtttcccagaaaagtcctaagccaccaaaattgccagatgt 122
           ||| |||   ||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caatcccaaatactcatgtgtttcccagaaaagtcctaagccaccaaaattgccagatgt 355

                                                                       
Query: 123 agccttcacaatgtaaacattatgtttcaacaagatgcttctgttttattctttattaat 182
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 354 agccttcacaatgtaaacattatgtttcaacaagatgcttttgttttattctttattaat 295

                                                                       
Query: 183 tagattcatcctttcaaaatttcataaatgtgtacaacacattctctgatctcccatcca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tagattcatcctttcaaaatttcataaatgtgtacaacacattctctgatctcccatcca 235

                                         
Query: 243 tgcctgtccgctttccctgactgtaacggg 272
           |||||||| |||||||||||||||||||||
Sbjct: 234 tgcctgtctgctttccctgactgtaacggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 674
Length adjustment: 9
Effective length of query: 263
Effective length of database: 665
Effective search space:   174895
Effective search space used:   174895
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)