BAC Information

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BAC

Clone NameMSMg01-294K18
Chromosome11 (Build37)
Map Location 62,789,496 - 62,983,250
singlet/doubletdoublet
Overlap geneCdrt4, Tekt3, Pmp22
Upstream geneLOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
Downstream geneLOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294K18.T7 (MSMg01no294_k18.b1)MSMg01-294K18.TJ (MSMg01no294_k18.g1)
ACCAG422784AG422785
length742744
length of high quality
(start - end)
320 (37 - 356)290 (67 - 356)
definitionCHROMAT_FILE: MSMg01no294_k18.b1 PHD_FILE: MSMg01no294_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:24 2005CHROMAT_FILE: MSMg01no294_k18.g1 PHD_FILE: MSMg01no294_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,982,935 - 62,983,250)(62,789,496 - 62,789,785)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAT
GCTTAAACAGGACACAGATGAGGAGACAAGGATTTGAGAAAGCACTGGGG
TACCAGCGTCTGCTTGATAACTACTCAGCACCAGATCCTATCAAACCTTC
AAGAAAACCAGCCGTACTCGCTGCCCCCAGCTGCCCCTTCGTTTATATCT
CTATCTGTCTTCAAAATGGAAAGTCCTGTGCGAAGCCCCATTTACCTAAA
AACTATGTTGAAAATATGGATGAGAAACAGAAAACAAAGCAAGAACGAAC
CAAAACAAAACCTCGCTTTAAATCATGAGGGCAGAAAGAGGGGAAGATGA
AGGCCTCTTTTACATGACCCCCCGCCAATCAGAAAACAAAGAAACAAAAA
AATCCAAACCCCACTAACTCTAGATAGACCAATTGTTTCTTCTGATATCT
CCTACAGGAATTTTTTTAGTCTGTGAACAGCAGACAATGCTGCAAATAAG
CTATGCTGAAATGCAGAAAAGCTAAGCAAAGAATTAAGCCACACACACAC
ACACACACACACACACACACACACACACACACACATCCTTGGAGGAAAAA
GAGAAAAGAGGTAAACAAATTTCAACGCTTCCAGATAGGAAGTGTGCTCT
CAACAGCTGGGTGTGCTCGCCATTCTGTGGACTGTTGCTCCCAGAATCCC
AAGTACAGTGGAATGCAGCCACTAAAAGGGCAGTTTCTAATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGTCCAGGAAAGCAAAGACAGGGAACCTCAGAC
CAAGCTGGCTAGTGAGGCTGACCACATCAGATCTGAGTTTGATTGAGAGA
CCCTGCCTCAGTGAATAAGATGGGAGAGTCCTCAAGAATGATTCATGATA
TCAACCTCAGATCTTTATGTGCACCCACCCCCCAAAGCATGCCACTCACA
CACACCTGAAAATAAAACCAAAGTACAGTTATAAATTAGAGAATATAGTT
TGTACCAGTAGCTCAGGGCTTTGGTTTTCAAGAAAGCCAGGAAGCAAACC
TTTGTGGGTCAGTTTGCCCCCCCTCCCCCCAAATAGGATGTTGCCTGTCT
TGAGTATGAGGAATCTGAGGAAAAAAAATATTCAGGAAGTTGTGCGGGGC
ACATTTATAAAGAGGCATTCTATTCACTTGCATTTTTGTTGCTGTTGTAA
AATACTCTGATCAAAGTAACTTGGGGGTGGGGGGAAAGTGCCTGTATTTT
TAGGTCATAACCCATAATTGAGAGAAGTCAGGTCAGGAACTCAAGGTATG
ACCCTCACGGAAGGAACGGTGGAGGTATGTGGCTTTCTGGCTTTCTGTTT
GGTTTGTTATACTGTTCATACTCAGCTTTCTTACCTTGTTCATGAGCCCC
CTCTTGACCAGTGATGGGTTCTCTCCCTACTTGTGTTGATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_k18.b1 MSMg01no294_k18.b1 CHROMAT_FILE:
MSMg01no294_k18.b1 PHD_FILE: MSMg01no294_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:24 2005
         (320 letters)



>mm_chr11_62982731_62983450
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatgcttaaacaggacacagatgaggagacaaggatttgagaaagcactgggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcagatgcttaaacaggacacagatgaggagacaaggatttgagaaagcactgggg 461

                                                                       
Query: 65  taccagcgtctgcttgataactactcagcaccagatcctatcaaaccttcaagaaaacca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taccagcgtctgcttgataactactcagcaccagatcctatcaaaccttcaagaaaacca 401

                                                                       
Query: 125 gccgtactcgctgcccccagctgccccttcgtttatatctctatctgtcttcaaaatgga 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gccgtactcactgcccccagctgccccttcgtttatatctctatctgtcttcaaaatgga 341

                                                                       
Query: 185 aagtcctgtgcgaagccccatttacctaaaaactatgttgaaaatatggatgagaaacag 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 340 aagtcctgtgcgaagccccatttacctaaaaactatgctgaaaatatggatgagaaacag 281

                                                                       
Query: 245 aaaacaaagcaagaacgaaccaaaacaaaacctcgctttaaatcatgagggcagaaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaaacaaagcaagaacgaaccaaaacaaaacctcgctttaaatcatgagggcagaaagag 221

                           
Query: 305 gggaagatgaaggcct 320
           ||||||||||||||||
Sbjct: 220 gggaagatgaaggcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_k18.g1 MSMg01no294_k18.g1 CHROMAT_FILE:
MSMg01no294_k18.g1 PHD_FILE: MSMg01no294_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:24 2005
         (290 letters)



>mm_chr11_62789296_62789985
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtccaggaaagcaaagacagggaacctcagaccaagctggctagtgaggctgaccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cagtccaggaaagcaaagacagggaacctcagaccaagctggctagtgaggctaaccaca 260

                                                                       
Query: 61  tcagatctgagtttgattgagagaccctgcctcagtgaataagatgggagagtcctcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatctgagtttgattgagagaccctgcctcagtgaataagatgggagagtcctcaag 320

                                                                       
Query: 121 aatgattcatgatatcaacctcagatctttatgtgcacccaccccccaaagcatgccact 180
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 aatgagtcatgatatcaacctcagatccttatgtgcacccaccccccaaagcatgccact 380

                                                                       
Query: 181 cacacacacctgaaaataaaaccaaagtacagttataaattagagaatatagtttgtacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacacctgaaaataaaaccaaagtacagttataaattagagaatatagtttgtacc 440

                                                             
Query: 241 agtagctcagggctttggttttcaagaaagccaggaagcaaacctttgtg 290
           ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 agtagctcagggctttggttttcaagaaagccaggaaccaaacctttgtg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)