BAC Information

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BAC

Clone NameMSMg01-294L15
Chromosome11 (Build37)
Map Location 70,063,840 - 70,064,152
singlet/doubletsinglet
Overlap geneAlox12
Upstream geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e
Downstream geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L15.T7 (MSMg01no294_l15.b1)MSMg01-294L15.TJ (MSMg01no294_l15.g1)
ACCAG422826AG422827
length715712
length of high quality
(start - end)		317 (55 - 371)196 (130 - 325)
definitionCHROMAT_FILE: MSMg01no294_l15.b1 PHD_FILE: MSMg01no294_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:28 2005CHROMAT_FILE: MSMg01no294_l15.g1 PHD_FILE: MSMg01no294_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACCATGTAAACCAGGCTGGCCTTGAACCCACAGAGA
CGCACCTGCCTTTGCTTCCTGAGTGTTAGAGGCAAAGCGTTGCACACCAC
AGTGGCTCACAGCAGCCAGCCTTTGCTCTCCTTCACCGCTTGAGCTCAAA
GCCCTACTACGTTTTCCCCCACACCACTCCTAGGAGCTCCTTTCTGGACT
CCCTGCTTTCCATCTCCAGACCCCAGCCTGCCCACCGTGGTGCTATAGCG
AGGGTAGCAGAGTGACAGGTTTCTTATCCCGTCTACTTGAGTGTAAGCTG
GAAGGAAACGATTTTGCTTATTTTTTTATTCCCCCCCCCACTGTGACTGC
GTCGCACACGGAGTGGGAGTTCAGTAACTACTCAAAAAAACACTCTCCCA
GATTCGGCCCCCTAACCCCAGCTCCCCAGCTCCAACACTGTTCCTGCCCT
CGGATCCTCCACTTGCCTGGCTCTTGGCTAAGATCTGGGTCCGAAATTCA
GATTTCCAACTGCAGGAGCTCCAATTCCATTTGCTGAACACCCATCTGGT
GGCTGAGGTCATCGCTGTTGCCACCATGAGATGCCTCCCAGGACTGCACC
CTATCTTCTAGGTACAAACTTGACCCTCCTTGTCCTGTCTCCCTTCGTCC
ACAAAGAGCTATTTG

NNTTACTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCACAAAATCTCTCTCTCTTTTTTTTTAAAT
ATTTTTTAAACTTATGTGAATATCTGCCCGTCTCTGTGGATGTGCGCAGT
TAGTGTAGATTCCCCCAAGCCAGAAGAGGATTCGATAGGACTGGACTCAC
AGCGGTTGTAAGTTCTTACCCCGAACTCCCACCTGGCTACTGGGAGCCTG
GTCCTCTCCTAGAGCAGCAAGCACTCCTACCTGTCCTACCTGCTGAGCCT
TCTCTCCAGTCCTGGACATGTCCTTTTTTTTTCACATCTCCAAAAGATGG
GGCTGGTCATGTTTGNATGGCTTCCNACCAAGCCCTGGAGGNTGAGGNTG
AGGNTGAGGNTGAGGCTGAGGCTAGAAATGATAAAGAAGCTGAGGGTGAG
GCTGTGGCTGAGGTAGGACTGAGGAGTTCTAGACAACCTGGGCCATACAG
GGATACCTTGCCCAAACAAAGAAACAAATGAACAAAAGCAAAATAAATTA
AACCCCACAGGGTTTCTCTGTCCTGACTGGCTTCAAACTCACAACATCTA
CCTGCCTCTGGTTCACTAGTGCTGGGATTAAAGGCATGCATTACGAAACC
TGGGCTGGGATTTTTATTTCTTTGCTGAAGTTGTTGCTAGTCTAGACAAG
GTGGTTTAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l15.b1 MSMg01no294_l15.b1 CHROMAT_FILE:
MSMg01no294_l15.b1 PHD_FILE: MSMg01no294_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:28 2005
         (317 letters)



>mm_chr11_70063544_70064260
          Length = 717

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaccatgtaaaccaggctggccttgaacccacagagacgcacctgcctttgctt 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 609 ggaattcaccatgtaaaccaggctggccttgaacccacagagatgcacctgcctttgctt 550

                                                                       
Query: 64  cctgagtgttagaggcaaagcgttgcacaccacagtggctcacagcagccagcctttgct 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cctgagtgttagaggtaaagcgttgcacaccacagtggctcacagcagccagcctttgct 490

                                                                       
Query: 124 ctccttcaccgcttgagctcaaagccctactacgttttcccccacaccactcctaggagc 183
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctccttcatcgcttgagctcaaagccctactacgttttcccccacaccactcctaggagc 430

                                                                       
Query: 184 tcctttctggactccctgctttccatctccagaccccagcctgcccaccgtggtgctata 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcctttctgtactccctgctttccatctccagaccccagcctgcccaccgtggtgctata 370

                                                                       
Query: 244 gcgagggtagcagagtgacaggtttcttatcccgtctacttgagtgtaagctggaaggaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcgagggtagcagagtgacaggtttcttatcccgtctacttgagtgtaagctggaaggaa 310

                        
Query: 304 acgattttgctta 316
           ||| |||||||||
Sbjct: 309 acggttttgctta 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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