BAC Information

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BAC

Clone NameMSMg01-295H17
Chromosome11 (Build37)
Map Location 74,747,299 - 74,747,611
singlet/doubletsinglet
Overlap geneSmg6
Upstream geneOlfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478
Downstream geneLOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295H17.T7 (MSMg01no295_h17.b1)MSMg01-295H17.TJ (MSMg01no295_h17.g1)
ACCAG423365AG423366
length742742
length of high quality
(start - end)
316 (46 - 361)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no295_h17.b1 PHD_FILE: MSMg01no295_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:26 2005CHROMAT_FILE: MSMg01no295_h17.g1 PHD_FILE: MSMg01no295_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCGTATAGTTCTGACTGGTTTTGAAATCAAGATCTTCAGAGTGA
AGATTATAGGTGTGTTTTAAACCCCGCACTTGAGAGGCAGAGGCAGGCGG
ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGC
CAGAGCTACACAGAGAAACCCTGTCTTGGAAAAAACAAAACAAAAAAATG
ATTATACTTGTGTGCCCCCATGCCTTATGGGGTGATCTTTTGTTTCGATT
TTATTATTTTTTAGTGTGTGGTATGTCACTGACTATGGAGCTTTGGCTAG
ACTGGCTGGCTGTTATTTTTCACCACCCCCCCGCCCCCTCTTTCTCTCTA
CCTATAGCAGTAGGCACCCCCCCCCAGACATAAACATAATGTGGGTGCTG
GGAATCTAGACTCCCGTCCTCGTGCTTGTGCAGCAAGTATTTTACCTGTG
GTCTATATCTCCAGCCCCTAGAATAAATATTCTGAGAATTTGGTTTTATT
TTTATTTTATGTGAATGAGTGTTTTGGCTACATGTATGTCTGTGCACCAT
GTGTGTGCCTGATTTCCACTGAAGTCAAAACAGGACATCACAGTGCCTGG
AACTGGTTTTGAGCCTCCATGTGGTTTCTGGGAACTGAACCCTGGTCTCC
TGCTAAAGCATTAAGTGCTCTTAGCAACTCGGCCATTTCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGCTCCCCTCTGAAGAGCAGCAAGC
ACTATTAACCACTGAGCCATCTTTCTAGGCCTCACCTTTTTCTTTTGAGA
CTTGGCTAGATTAGCAACCCCAGGGAGCTCCCTGCTTCCACTCCTCCATC
TACAGTGGAATTACAGGAGTCTACTGCTATACCCAGCTTTTACATGAGTG
CCGAGACTCAAACTCAGGTCCCCTTGTTTACACAACGAGCATTTTACCAT
CCAAGCCATCTCCCAAACTCCAAAGATTTTCCTTTTATTTATTTATGTAC
ATTTTTAAAGTGTTTTTTACTGCCCCCCCCCCCCAGGACCTCACATATGC
TAGGCTCTACCACTGACCCACCGCCCCAAAACTAAAGTTTATATTTTTTC
TAGGGAATGCAATCCCAACTGAAATGTACAAATGTATATTTGATAGATTT
CTGGGTTACTTAGGTACATGCACTATTAGAACTCAGCAAAGATACACTTA
ATATTTATGCATTTCTTTGCAGTGTATTTTGCTCTAAACACTAAAAATAC
TGAATTCAACAAAACATGTGTACATGGAAGGATTAAGAAAAAGTATACTA
AGCTTGGTATAATGGCTCAAGTTTTTAGTTTAGCACTCCAGAGGCAGAGA
CAGGCAGATCTCTGTGAGTTTTAGGCTAACCTAGTCCACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_h17.b1 MSMg01no295_h17.b1 CHROMAT_FILE:
MSMg01no295_h17.b1 PHD_FILE: MSMg01no295_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:26 2005
         (316 letters)



>mm_chr11_74747096_74747811
          Length = 716

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcgtatagttctgactggttttgaaatcaagatcttcagagtgaagattata 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgtatagttctgactggttttgaaatcaagatcttcagagtgaagattata 263

                                                                       
Query: 64  ggtgtgttttaaaccccgcacttgagaggcagaggcaggcggatttctgagttcgaggcc 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgtgttttaaacccagcacttgagaggcagaggcaggcggatttctgagttcgaggcc 323

                                                                       
Query: 124 agcctggtctacaaagtgagttctaggacagccagagctacacagagaaaccctgtcttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcctggtctacaaagtgagttctaggacagccagagctacacagagaaaccctgtcttg 383

                                                                       
Query: 184 gaaaaaacaaaacaaaaaaatgattatacttgtgtgcccccatgccttatggggtgatct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaaaaacaaaacaaaaaaatgattatacttgtgtgcccccatgccttatggggtgatct 443

                                                                       
Query: 244 tttgtttcgattttattattttttagtgtgtggtatgtcactgactatggagctttggct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgtttcgattttattattttttagtgtgtggtatgtcactgactatggagctttggct 503

                        
Query: 304 agactggctggct 316
           |||||||||||||
Sbjct: 504 agactggctggct 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)