BAC Information

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BAC

Clone NameMSMg01-295P23
Chromosome11 (Build37)
Map Location 32,565,708 - 32,566,050
singlet/doubletsinglet
Overlap geneFbxw11
Upstream gene2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10
Downstream geneLOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295P23.T7 (MSMg01no295_p23.b1)MSMg01-295P23.TJ (MSMg01no295_p23.g1)
ACCAG423729AG423730
length743777
length of high quality
(start - end)
303 (438 - 740)347 (76 - 422)
definitionCHROMAT_FILE: MSMg01no295_p23.b1 PHD_FILE: MSMg01no295_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:04 2005CHROMAT_FILE: MSMg01no295_p23.g1 PHD_FILE: MSMg01no295_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGGCTGGTCCCAGTACCATCCCATGTTTCCTTATGAAAGGATGGC
AAGAAGATTTCACACAAGCTTGACCCAAGGGGACAGGCACACAGAGGCAG
AAGCCAGAGTGACATGGCTGAAAGTCAAGACAAAGGCATCTTCCAGAAGA
AGCCCAAAGAGGCAAGGAAAGGGTCCTCCCCAAGAACCATGAGAGGGAAT
ACAGTCAAGCTGACTCCTTCATACTTCCCCTGGCTAGTCAACCCAAAACA
AGCTAGAGTCATTTAGGAAGAGAGAACCTCAACTGAGGAAATGCCTCCCC
AAGATTTGCATCTAGGTTTTTCTGTAGCGCCTTTTCTCAATTAGGGATTG
ACTCGGGAGGACCCAGGCCACCCCACGTGATGACCCTCCTGGACTGGTGG
TCTTGGGTGCTGTAAGAAAGCAGGCTGAGCAAGCTACAAGGGGAGGCCAG
TAAGCAGAGATCTTCCGCGGCCTCTGGTTCCGTTTCTACCTCCAGGTACC
TGCCTGAGGTCCTGCCCTGACTTTCCTCAGTGATGGACTATGATGATGTG
GAACCCTTTCCTCCCAACTTGCTTATGACCACGGTGCTCATCCCAGCAAT
GGAATCCCTAGCAAAGGCAGCACTTCAATCATGACCCGAGACCTATGGTC
TCCAGAGCTGGGAGAAAATTATTCTCTGTTGTTTTGGCTCCTN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCCACCAAATTAACGCAGAGATCTTGAT
TGGTTTAAAACTGTATTTCCTTGACCCCGCAACACTTCGTTGCATACATT
GCATACCCAGTGCAGTGATGGTATTGAGTAAGTGAGGGAGGAGGTTTGTT
TCCTATTGAGAAGGCTGAGGCAGTTGGTCTGGTCAGAGTTGCTTCTCTGT
GGTCAGAGAGATGAATAATAGAAAAACAACTGGTGTGTTAATGCCAGGTT
AGTTTAGGGTGTATGAGGGATAGATTAAAGATTGGACCGGAGGGACTTTC
TTTGTCATGGCAGTTTGGTTAGCTTGTCTGATTCCTAGGAAGGTAAGATA
ATTTGGTGATGTGGAGACCCCCCCCCGCACTATTTCACATTGATTTTTAG
TCTGACCTGATAGGGCCCATTGAAGGAGTTCAGTTCCTACAGTGGGCTCC
TGTAATTTTTACTTAAACTTAATTTATCTTTTATTTTTTTTTAAAGATTT
ATTTATTAGTGTATGTTCTTATCTCCATTTACCCCGTTTCCTTTATATTA
TATTCATTTTATTCCTCCCCTTTTCTTATATTTTATCAATCCTTCACTTT
TTCCCTTCGTCCCATCCCTATTTTTATTCTCTTCTTTCTTATTTTCCCCA
TTCTTTTTTTCAACTTAATACAAATAATCCGTTCTTTACTTCATCCCATT
TACTTGATTCATAAATATTCATTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_p23.g1 MSMg01no295_p23.g1 CHROMAT_FILE:
MSMg01no295_p23.g1 PHD_FILE: MSMg01no295_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:04 2005
         (347 letters)



>mm_chr11_32565508_32566254
          Length = 747

 Score =  594 bits (307), Expect = e-174
 Identities = 334/343 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaaattaacgcagagatcttgattggtttaaaactgtatttccttgaccccgcaacac 60
           |||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||
Sbjct: 201 accaaattaacgcagagatcttgattggtttaaaactgtatttccaggaccaggcaacac 260

                                                                       
Query: 61  ttcgttgcatacattgcatacccagtgcagtgatggtattgagtaagtgagggaggaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcgttgcatacattgcatacccagtgcagtgatggtattgagtaagtgagggaggaggt 320

                                                                       
Query: 121 ttgtttcctattgagaaggctgaggcagttggtctggtcagagttgcttctctgtggtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ttgtttcctattgagaaggctgaggcagttggtctggtcagagttgcttctttgtggtca 380

                                                                       
Query: 181 gagagatgaataatagaaaaacaactggtgtgttaatgccaggttagtttagggtgtatg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagatgaataatagaaaaacaactggtgtgttaatgccaggttagtttagggtgtatg 440

                                                                       
Query: 241 agggatagattaaagattggaccggagggactttctttgtcatggcagtttggttagctt 300
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||
Sbjct: 441 agggatagattaaagattggactggagggactttctttgtcatggcagtttggagagctt 500

                                                      
Query: 301 gtctgattcctaggaaggtaagataatttggtgatgtggagac 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgattcctaggaaggtaagataatttggtgatgtggagac 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)