BAC Information

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BAC

Clone NameMSMg01-296I17
Chromosome11 (Build37)11 (Build37)
Map Location 64,726,363 - 64,726,59664,726,310 - 64,726,663
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1, LOC626959
Downstream geneElac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4, Zkscan6, Dnahc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I17.T7 (MSMg01no296_i17.b1)MSMg01-296I17.TJ (MSMg01no296_i17.g1)
ACCAG424128AG424129
length758749
length of high quality
(start - end)		239 (130 - 368)354 (79 - 432)
definitionCHROMAT_FILE: MSMg01no296_i17.b1 PHD_FILE: MSMg01no296_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:46 2005CHROMAT_FILE: MSMg01no296_i17.g1 PHD_FILE: MSMg01no296_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:46 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,726,363 - 64,726,596)(64,726,310 - 64,726,663)
sequence
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAACAAATATCCTAATAA
AGAGCAGGGCTCCAGAGCCATATGACCAGGAGGACAGTTTCGTTTCTGAG
AGATGAACTTGAAGATTGGTAATTCTTTTACCCTTAAGTCTTTGCTTGTA
AAAATCAAGGTGAAGATAGCACTTATCCCCAGGGAGAAGGAACAAATGAG
TCCCCATGGGTGCAACACTTAAAATCTCAGCATCAAATCTGCCCATGCAG
ATAGACACAAGTCTGAGCAAGAAGGATGTCAGCGGGCACTCAGCTCCCTT
GTATAGAAGCTGGTTTTTTTTAATTTCCCACAAGCACTGGGAACCAGGCT
GATTTCAAGCTGAGTTCCCCCCCACACCTAGATGAGAATCTCTTGAACAT
AAAAACATTCCCAGAGTGGGAGGGGAGAATATTCTCTGGGTTCCTTAAAG
ACCGATCTGAAAGGACTGTTTTTGACAACTGATTTCAAATATCCTGGAAG
ACAGGACACACATGTACCTCTTCACCAGAGCTGCCTTGAGGAGCAAGATT
GAGAGCCAGGAGATAAGAAAGTTGTGGGTCTCTGAATGTCCCAATTTTAC
CAGATCTGGACCTACACATTAATAAAGTCTGGTGCCAGCATCCCAACAGT
GCTATGGGGTTGTCCAGAAGTCTTTTGGCTTTCTACTAACCCTTTACAAA
CACACTTC

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAACAAATATCCTAAT
AAAGAGCAGGGCTCCAGAGCCATATGACAAGGAGGACAGTTTCGTTTCTG
AGAGATGAACTTGAAGATTGGTAATTCTTTTACCCTTAAGTCTTTGCTTG
TAAAAATCAAGGTGAAGATAGCACTTATCCCCAGGGAGAAGGAACAAATG
AGTCCCCATGGGTGCAACACTTAAAATCTCAGCATCAAATCTGCCCATGC
AGATAGACACAAGTCTGAGCAAGAAGGATGTCAGCGGGCACTCAGCTCCC
TTGTATAGAAGCTGGGTAACCAAAATTTCAGAGAAGCACTGGGAACCAGG
CTGATTTCAAGCTGAGTTCCAATTCACACCTAAGCTGAGCAATCTCTTGA
ACATANAAAACATTCCCAGAAGTGGGGAGGGGGAGAATATTCTCCTGGGG
TTCCTTTAAAGAACCGATCTTGAAAGGGACTGTTTTTTTGACCAACTGAA
TTTCCAAAATATTCCCGGAAAAAAAGGGAAACCCACTGGGGACCCCCTTT
TCCCCAAAAATTGGGCCTTTGGAGGGATCCCACAAATTTGTGGAGACCCC
CCCGGAAAAAATTAAAAAAAAATTTGGGGGGGGGGCCCCCCTAGAAAAGG
GGCCCCCCCTATTTTTTTTTACAAAAGAAAAGCGGGGAGGCCCCTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i17.b1 MSMg01no296_i17.b1 CHROMAT_FILE:
MSMg01no296_i17.b1 PHD_FILE: MSMg01no296_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:46 2005
         (239 letters)



>mm_chr11_64726163_64726801
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggacagtttcgtttctgagagatgaacttgaagattggtaattcttttacccttaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggacagtttcgtttctgagagatgaacttgaagattggtaattcttttacccttaagt 260

                                                                       
Query: 61  ctttgcttgtaaaaatcaaggtgaagatagcacttatccccagggagaaggaacaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgcttgtaaaaatcaaggtgaagatagcacttatccccagggagaaggaacaaatga 320

                                                                       
Query: 121 gtccccatgggtgcaacacttaaaatctcagcatcaaatctgcccatgcagatagacaca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccccaagggtgcaacacttaaaatctcagcatcaaatctgcccatgcagatagacaca 380

                                                                 
Query: 181 agtctgagcaagaaggatgtcagcgggcactcagctcccttgtatagaagctgg 234
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 381 agtctgagcaagaaggatgtcagggggcactcagcccccttgtatagaagctgg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no296_i17.g1 MSMg01no296_i17.g1 CHROMAT_FILE:
MSMg01no296_i17.g1 PHD_FILE: MSMg01no296_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:46 2005
         (354 letters)



>mm_chr11_64726110_64726863
          Length = 754

 Score =  661 bits (342), Expect = 0.0
 Identities = 351/354 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctttaacaaatatcctaataaagagcagggctccagagccatatgacaaggaggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctttaacaaatatcctaataaagagcagggctccagagccatatgacaaggaggaca 260

                                                                       
Query: 61  gtttcgtttctgagagatgaacttgaagattggtaattcttttacccttaagtctttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcgtttctgagagatgaacttgaagattggtaattcttttacccttaagtctttgct 320

                                                                       
Query: 121 tgtaaaaatcaaggtgaagatagcacttatccccagggagaaggaacaaatgagtcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaaaatcaaggtgaagatagcacttatccccagggagaaggaacaaatgagtcccca 380

                                                                       
Query: 181 tgggtgcaacacttaaaatctcagcatcaaatctgcccatgcagatagacacaagtctga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggtgcaacacttaaaatctcagcatcaaatctgcccatgcagatagacacaagtctga 440

                                                                       
Query: 241 gcaagaaggatgtcagcgggcactcagctcccttgtatagaagctgggtaaccaaaattt 300
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gcaagaaggatgtcagggggcactcagcccccttgtatagaagctgggtaaccaaaattt 500

                                                                 
Query: 301 cagagaagcactgggaaccaggctgatttcaagctgagttccaattcacaccta 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagaagcactgggaaccaggctgatttcaagctgagttccaattcacaccta 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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