Query= MSMg01no297_l11.b1 MSMg01no297_l11.b1 CHROMAT_FILE:
MSMg01no297_l11.b1 PHD_FILE: MSMg01no297_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:13 2005
(607 letters)
>mm_chr11_69215679_69216685
Length = 1007
Score = 1013 bits (524), Expect = 0.0
Identities = 564/578 (97%), Gaps = 8/578 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcaccaatgactgggcacgaatcacaatcctaagaagctgacgaggctgcctc 64
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattcagcaccaaggaatgggcacgaatcacaatcctaggaagctgacgaggctgcctc 264
Query: 65 cttctcagcccctttctgcaactacttcatgcctcaggtctctcgcctagaattcttagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttctcagcccctttctgcaactacttcatgcctcaggtctctcgcctagaattcttagg 324
Query: 125 cattcatatgcccacatgctagaaaaccaatgaatggctcaagtgaaagatttagtcgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattcatatgcccacatgctagaaaaccaatgaatggctcaagtgaaagatttagtcgag 384
Query: 185 cttcgagtacctcccaaatgactccctgggaggagagaatgtccaggtataaaggacacg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcgagtacctcccaaatgactccctgggaggagagaatgtccaggtataaaggacacg 444
Query: 245 gaattgatttttatgtttcttcattgtttcctctggttttatactgcttaaaattttgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaattgatttttatgtttcttcattgtttcctctggttttatactgcttaaaattttgca 504
Query: 305 ttaaaaaaaggaaaaaaaaaaaactaaccatggatgagaagtagtctataattcattcta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaaaaaaaggaaaaaaaaaaaactaaccatggatgagaagtagtctataattcattcta 564
Query: 365 attctctttcgcctgttttgttgttttttacagaccagacagggtttctctgtatacccc 424
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attctcttttgtttgttttgttgttttttacagaccagacagggtttctctgtatacccc 624
Query: 425 tggctgttctggaactcaccaggctggcctcaaactcacaaagatctacctgcctctgcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggctgttctggaactcaccaggctggcctcaaactcacaaagatctacctgcctctgcc 684
Query: 485 tcactgctgggattaatggtgtgtgccagccctacctggccactcttttcttttcttttc 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 tcactgctgggattaatggtgtgtgccagccctacctggccactcttttcttttcttt-c 743
Query: 545 tttt-cttttcttttcttttcttttcttt--tcttttt 579
|||| |||| |||| |||| |||| |||| |||||||
Sbjct: 744 tttttcttt-cttt-cttt-cttt-ctttcttcttttt 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_l11.g1 MSMg01no297_l11.g1 CHROMAT_FILE:
MSMg01no297_l11.g1 PHD_FILE: MSMg01no297_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:13 2005
(526 letters)
>mm_chr11_69387825_69388748
Length = 924
Score = 957 bits (495), Expect = 0.0
Identities = 517/525 (98%), Gaps = 2/525 (0%)
Strand = Plus / Minus
Query: 2 ctatgtagaccagactgtcctcaaagatcctctcagatatcctctatacctgcttctgga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ctatgtagaccagactgtcctcaaagatcctctcagatatcctctatacctgcttctgga 865
Query: 62 ctgtccgcttctccccccccccttgagataagggctcatctgcagactgagcttgggctc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ctgtccgcttctccccccccccttgagataagggctcatctgcagactgagcttgggctc 805
Query: 122 cgtgagtagctgaggatgaccttagactcctcatcttcatgcttcaagtgctaggatcac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cgtgagtagctgaggatgaccttagactcctcatcttcatgcttcaagtgctaggatcac 745
Query: 182 aggcatgcactgctacgccctgctcgtaaacataggtggaaaaacccctttgtgtgcacg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aggcatgcactgctacgccctgctcgtaaacataggtggaaaaacccctttgtgtgcacg 685
Query: 242 tgatatgtgtgtgtgcgcgtgtgtgaattttgggacatgcagaggtcagaacacacttct 301
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatatgtgtgtgtgcg--tgtgtgaattttgggacatgcagaggtcagaacacacttct 627
Query: 302 gggtatgggtcactgctttccatgttgattgagacagggccccccgctcagtgctgcagg 361
||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||
Sbjct: 626 gggtatgggtcactgctttccatgttgattgagacagggtctctcgttcagtgctgcagg 567
Query: 362 tgaggggattgtcttgtctctaccttgtgtcttgtcatagggctctgggattgcaggcag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgaggggattgtcttgtctctaccttgtgtcttgtcatagggctctgggattgcaggcag 507
Query: 422 gagctgctgcgtctggcagaagcgggttgtagaattgtggagagagggagtgaacttggt 481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gagctgctgtgtctggcagaagcgggttgtagaattgtggagagagggagtgaacttggt 447
Query: 482 ggttagaggtggcaatgacaatctgctgaggacactgactgtggg 526
|||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 446 ggttagaggtggtaatgacaatctgctgaggacactgactgtggg 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 924
Length adjustment: 10
Effective length of query: 516
Effective length of database: 914
Effective search space: 471624
Effective search space used: 471624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
