Query= MSMg01no298_a08.b1 MSMg01no298_a08.b1 CHROMAT_FILE:
MSMg01no298_a08.b1 PHD_FILE: MSMg01no298_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:36 2005
(639 letters)
>mm_chr11_114587653_114588692
Length = 1040
Score = 1112 bits (575), Expect = 0.0
Identities = 619/639 (96%), Gaps = 12/639 (1%)
Strand = Plus / Plus
Query: 5 gaattcagttctctccttcaccatgtgtgtctggggctcaaccctaggtcatagaagtgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcagttctctccttcaccatgtgtgtctggggctcaaccctaggtcatagaagtgg 269
Query: 65 tagcaagcccctttctctactgagccatctcaccagtcctagatataggactctacctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tagcaagcccctttctctactgagccatctcaccagtcctagatataggactctacctcc 329
Query: 125 cttctttaattctttttaaattattgatgatgatgatgattgtgggtgtgctacatgaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cttctttaattctttttaaattattgatgatgatgatgattgtgggtgtgctacatgaca 389
Query: 185 cagatcagaggacaactttgtggaatccattctttttttccccccatttttatgtgggtt 244
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 390 cagatcagaggacaactttgtggaatccatt----ttttccccc-atttttatgtgggtt 444
Query: 245 ctaggatgtgaactctgcttgtcaggcttacccaacaaagtgccttgtactcagcctgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctaggatgtgaactctgcttgtcaggcttacccaacaaagtgccttgtactcagcctgtc 504
Query: 305 catcaatccctcctacattttctcacttccttgcctcaagctcatgagaaacacatctct 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catcaatccctcccacattttctcacttccttgcctcaagctcatgagaaacacatctct 564
Query: 365 ctttgtgtcattcatgtgtccatcagct----cattcattcatgcaatgaaaccatattt 420
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 ctttgtgtcattcatgtgtccatcagctagctcattcattcatgcaatgaaaccatattt 624
Query: 421 acaacgtgccagccgcatagctaagccatgcttgcatgcattgagcctgaccctcaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaacgtgccagccgcatagctaagccatgcttgcatgcattgagcctgaccctcaagga 684
Query: 481 atttccattccggagatgaattcagaagggtggtggtggtgcaggggataagttagcaga 540
||||||||||| |||||||||||||||||||||||||| || |||||| |||| ||||
Sbjct: 685 atttccattccagagatgaattcagaagggtggtggtg---caagggatacgttaacaga 741
Query: 541 agagacccggacattgtaacagtaacaaatcagacatgctccgaactgacccaggtgcgg 600
|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct: 742 agagacccggacattgtagcagtgacaaatcagacatgatccgaactgacccaggtgcgg 801
Query: 601 ggcttcccacgctctggtcactttgattgcgttttcggg 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ggcttcccacgctctggtcactttgattgcgttttcggg 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space: 647870
Effective search space used: 647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_a08.g1 MSMg01no298_a08.g1 CHROMAT_FILE:
MSMg01no298_a08.g1 PHD_FILE: MSMg01no298_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:36 2005
(591 letters)
>mm_chr14_27466132_27467122
Length = 991
Score = 1112 bits (575), Expect = 0.0
Identities = 587/591 (99%)
Strand = Plus / Plus
Query: 1 aacattaaagggtttatttttgtggtactttattatgcacagtgattattttggtttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacattaaagggtttatttttgtggtactttattatgcacagtgattattttggtttttt 260
Query: 61 tcttacaggttttaatgtggaaacagtagaatataagaacatttgtttcacagtatggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttacaggttttaatgtggaaacagtagaatataagaacatttgtttcacagtatggga 320
Query: 121 tgttggtggtcaagataaaattaggcctctctggaggcattacttccagaatacccaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttggtggtcaagataaaattaggcctctctggaggcattacttccagaatacccaggt 380
Query: 181 gagaaatgccatatatttgtaactttaatttattgattttatactgaatgtttacacgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaatgccatatatttgtaactttaatttattgattttatactgaatgtttacacgga 440
Query: 241 gtttacattcttctcatcagcagtctcattctttagtatcctctgactggtgctttgaaa 300
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct: 441 gtttacattcttctcatcaccagtcttattctttagtattctctgactggtgctttgaaa 500
Query: 301 gttcagttgtgtcgtgaggaagaactaaatgtagctgctctggtaagatttagaatggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcagttgtgtcgtgaggaagaactaaatgtagctgctctggtaagatttagaatggaa 560
Query: 361 gtgattgagttctcaagaatgaattattgcaggtctggtgtggtggcacacacctttatt 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgattgagttctcaagaataaattattgcaggtctggtgtggtggcacacacctttatt 620
Query: 421 tcagcccttagaagcagaggcaggtggatctctgagtttaaggacagacagggccacaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagcccttagaagcagaggcaggtggatctctgagtttaaggacagacagggccacaga 680
Query: 481 gagaaatcctgtcttgaaccctcccctccaaaaaaattcccaaaatacaaacaaacaaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaaatcctgtcttgaaccctcccctccaaaaaaattcccaaaatacaaacaaacaaaa 740
Query: 541 agaatgaattattttatcagtagttctttttattttaaccttaattttgag 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaatgaattattttatcagtagttctttttattttaaccttaattttgag 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
