Query= MSMg01no298_e24.b1 MSMg01no298_e24.b1 CHROMAT_FILE:
MSMg01no298_e24.b1 PHD_FILE: MSMg01no298_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:58 2005
(570 letters)
>mm_chr11_115183004_115183973
Length = 970
Score = 1025 bits (530), Expect = 0.0
Identities = 560/576 (97%), Gaps = 10/576 (1%)
Strand = Plus / Minus
Query: 5 actgctgcccagagatgctggttggatgctgcaaagtctggttcccacgcggtgccctca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 actgctgcccagagatgctggttggatgctgcaaagtctggttcccacgcggtgccctca 829
Query: 65 atcgggctgcagtcgtctagcgccccctgctggagaactgttgtttga----------cc 114
|||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 828 atcgggctgcagtcgtctagcgccccctgctggagaactgttgtttgacacccccccccc 769
Query: 115 ccccacgagtgtaggctgaccgcaggactgctgcgccctgcttgcggatgaaggtcttgc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ccccacgagtgtaggctgaccgcaggactgctgcgccctgcttgcggatgaaggtcttgc 709
Query: 175 ggtgggtcctcctgctcctctggacccactgtcctccagatcagaattgcctctccatcc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggtgggtcctcctgctcctctggacccactgtcctccagatcagaattgcctctccatcc 649
Query: 235 caccctcacacattattcgtcttcttttcacctatccttttgactggtgaagaaatcagg 294
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 648 caccctcacacattattcgtcagcttttcacctgtccttttgactggtgaagaaatcagg 589
Query: 295 gaacccagcacccggagttctgtctaggccgtattaaatgtccctatattgggcttcaaa 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaacccagcacccggagttctgtctaggccgtattaaatgtccctatattgggcttcaag 529
Query: 355 ggctgcaacgccagagtgggcacttttggagcgagagaactggatttcacttgagtcacg 414
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 528 ggctgcaacgccagagtgggcgcttttggagcgagagaactgaatttcacttgagtcacg 469
Query: 415 tctgtgtgctgaagagcatggcgtttaggacccaggggaagctcctgggcggctccctgg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctgtgtgctgaagagcatggcgtttaggacccaggggaagctcctgggcggctccctgg 409
Query: 475 gcagtgagagatttcccccctcccttccccggtgtgcagctcagatgtcccggtagtctg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gcagtgagagatttcccccctcccttccccggtgtgcagctcagatgtcccggtagtctg 349
Query: 535 tagtcgtctgtagtcgcggctctggcgctccgcatc 570
||||||||||||||||||||||||||||||||||||
Sbjct: 348 tagtcgtctgtagtcgcggctctggcgctccgcatc 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_e24.g1 MSMg01no298_e24.g1 CHROMAT_FILE:
MSMg01no298_e24.g1 PHD_FILE: MSMg01no298_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:58 2005
(462 letters)
>mm_chr11_115028795_115029655
Length = 861
Score = 841 bits (435), Expect = 0.0
Identities = 455/467 (97%), Gaps = 11/467 (2%)
Strand = Plus / Plus
Query: 1 cagatagaatcaacctactccttgctgacagggaggccaaaagtgtaggctttagggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatagaatcaacctactccttgctgacagggaggccaaaagtgtaggctttagggtca 260
Query: 61 ggcacagtagcctggagagtctccgctctgcagcttcctggctctgaaacgcaggaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcacagtagcctggagagtctccgctctgcagcttcctggctctgaaacgcaggaagtt 320
Query: 121 cctcagtgcctgcaaaccttagctccggtacagcgaggcagggtaccagtccccagcctg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 cctcagtgcctgcaaaccttagctccggtgcagcgaggcagggtaccagtccccagcctg 380
Query: 181 cagggctcttaggcagatggataagatgccaggcatgagtgtgagagcacccaggttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggctcttaggcagatggataagatgccaggcatgagtgtgagagcacccaggttcat 440
Query: 241 ctgggttcctc-----ttttttttgaccctggtctagaggcaaaggtagtatagctaccc 295
||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggttcctcccagcttt-----gaccctggtctagaggcaaaggtagtatagctaccc 495
Query: 296 caggcagcaagattaggtaggtgggtacagtgagtgagccggactgacaggcagctgact 355
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 496 caggcagcaagattaggtaggtgggtacagtgagtgagccg-actgacaggcagctgact 554
Query: 356 cctccgcaggcagctgacaggtttactttggctacggtggaacttcagaagggcctactt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cctccgcaggcagctgacaggtttactttggctacggtggaacttcagaagggcctactt 614
Query: 416 tggaaggaagctgctggttacttggatttgaaacagacaggtcaagg 462
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tggaaggaagctgctggttacttggatttgaaacagacaggtcaagg 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space: 384652
Effective search space used: 384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
