BAC Information

Click to search

BAC

Clone NameMSMg01-298F11
Chromosome11 (Build37)
Map Location 117,985,482 - 117,985,609
singlet/doubletsinglet
Overlap geneDnahc17
Upstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298F11.T7 (MSMg01no298_f11.b1)MSMg01-298F11.TJ (MSMg01no298_f11.g1)
ACCAG425419
length747812
length of high quality
(start - end)
---128 (172 - 299)
definitionCHROMAT_FILE: MSMg01no298_f11.b1 PHD_FILE: MSMg01no298_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:00 2005CHROMAT_FILE: MSMg01no298_f11.g1 PHD_FILE: MSMg01no298_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCCTTTCCTTTTATTTTACCTTCCTTACCCCCCATAATCCTTATNNAGC
AATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGTCTTCAAGGAGTCCCACGGNACGGGCGGCCTGTCCTTTTAG
AAGGGAGAGGAAGAGACCAGGGTGAGTGGCTAGAGGCGGCCACGGTTGCT
GAGAGGCCCAGGCTCCACGAGCCCACAGGTACCTTAAAGAAAAGCTTCAT
GTTGGCACAGCAGAAGTCGTAGGCTTGGAAGAGCCCCTTGAGGACGCTCA
CCGACAGGGAGATGTTGCCCAGGACCTCCTCGATCTCCCCCTGCAGGCCC
TTCAGCACCTCGTTTTTTTTCATGTAGGCCCTAGCCTACCCCGAGGCACA
GACGTGTTACCCACCACGTCCCTGACAGCGACATCTGGCGGCCATCCCTC
CTGGAGTGATCTGGACTTATGCAAGACGGCCTGTTCTCCCAAGACTCCTC
TCCTGTTCTGGCTACTGCCGACTAGGTGCCATCAGACATGGGAGATATAT
GGCGCTTTCTTGCTCCTATGGATAGGCTACCACTAGGATTTTCTTCCTTC
TTTACACTCATTTATTTATCATGTAGCTACTCTGTTGTCCGCCTCCTTAC
CCCCTAGACGAGGGTGCCACATCTTTTTATGCGACGGTCGCGCTCCCCCA
CGTCGTTCGCCTGGCATTTGACTCTCGGGATCTCTGGTATCCGCCGTTAG
TGCCCCCCCACCTCTGCCCCCTCCTCCCTTATCCCCCACACCGCCGGCAC
ACTACTTTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_f11.g1 MSMg01no298_f11.g1 CHROMAT_FILE:
MSMg01no298_f11.g1 PHD_FILE: MSMg01no298_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:00 2005
         (128 letters)



>mm_chr11_117985282_117985809
          Length = 528

 Score =  248 bits (128), Expect = 1e-70
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagtggctagaggcggccacggttgctgagaggcccaggctccacgagcccacaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgagtggctagaggcggccacggttgctgagaggcccaggctccacgagcccacaggta 260

                                                                       
Query: 61  ccttaaagaaaagcttcatgttggcacagcagaagtcgtaggcttggaagagccccttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttaaagaaaagcttcatgttggcacagcagaagtcgtaggcttggaagagccccttga 320

                   
Query: 121 ggacgctc 128
           ||||||||
Sbjct: 321 ggacgctc 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)