BAC Information

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BAC

Clone NameMSMg01-298I14
Chromosome11 (Build37)
Map Location 76,792,156 - 76,792,596
singlet/doubletsinglet
Overlap geneBlmh
Upstream gene1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1
Downstream geneSlc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298I14.T7 (MSMg01no298_i14.b1)MSMg01-298I14.TJ (MSMg01no298_i14.g1)
ACCAG425564AG425565
length718797
length of high quality
(start - end)
444 (39 - 482)---
definitionCHROMAT_FILE: MSMg01no298_i14.b1 PHD_FILE: MSMg01no298_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:15 2005CHROMAT_FILE: MSMg01no298_i14.g1 PHD_FILE: MSMg01no298_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGCGCGCGGAATTCCTCT
TGTATTCCACACAATGTAATATGTGTATTTGTGCTTTTTCCTGAAAAAGA
ATCTACTCTGCCCTAAGGAGTGTTTCTGCCATTTTTAAGGATGGAGGTTA
ATCTGGAACCAGGCTGTCTGGGCATCTCCAGGTATCACACCATTCAGGCT
GTGAATGGGACTGTCATGGAGTCCAACCTATCTGAGTGGCCTGTAATTGT
CGAAATACAGAGGAAGCACACCACACCCTCAGCTGTCGTTCATGCTTTAG
ACTGATGGATGCAGGAGGCTCTCTCACTTTCTCATTCAGAGAAGACTAAC
TTGCCCATGCTTCTAGCTTCAGAGCTTTGAGAACACAGATCTCAGCATGC
TGCTGTTACGTCACAGTCACTAGATAGATGCCCCACAGTGCAAGCTTAGT
TTCGTGAGAAACTTAAGATGGGTAAATCCAGTGCTGAGGAAAAGCCATTA
GCAGTGGCTTCAACTCACATTTATCAGTGGGATGCAGAGACCCGTGCACA
GCCATGATGGAACGAATGTCCCCGACCCTCACAGGAATTTATACTTAATC
TCCTGGGACATGGGAACAGGAGTTAAAGAGGGCTGTGATGAGACAGAGTG
CCATTCGTGGTGTGCTTCCTCAACTGTATAATTCGAGAAATAGACCGAAA
AACTAAGAAGGTGACTTC
AANAAAAAAAANAAAAAANAAAACCCCCCCAGCCCCCCCTCTACCNNNNN
CCCATGATATGGGTAGCCTGGNGGNCGCCTGGTCCCGACCAGANGGGAAC
NANAGAAGTTACAAGACGAGGGCAGGANNGCCNAGANAGGGGCAAAGGGG
CCAAANCNCCANCACACCCCCCANCAAAGGNGGCNAGGNAAGNCCCGGGA
GGGGACAAAAGGGGAAAACGCCCAGGGNCGCGNCCNCACGCAANAAGAAC
AGAAANCAAGGAGGGCANACAGGAGAAAGNACAANACNAAACNACACAGA
TTTTCGANCACCGGGAACNGAGAAAGACAAAACAGGGCNNNNAACCNAAA
AAAAGAAAAANGNGTTTTTTTTTTAGNAANACGNCCNCNCCCCNCCNNNC
NCAGCAGATTCAGAACGCCCCCCAAGANGGGNGGCAGAAGCCAGAGCGGC
ANCNAGGNAAANACACCGAAACAAAAAGCAGNNNCCAGAAACAGGAAGGA
GACGGAAGGCAGAAAGGGGCNAAGNAAGGGACNCCAAGGAAACANCCGCC
AAAGAAAGGGNNACACCGCAGGGAACAGACACCAGGACCAAGNCAAACCG
GAAACGGACAACAAAAAGGGGCAGGACAAAAGGGCCAAAGGGGCAGGCAA
AGACCACCAAGGGAAAGAACAGGGGCAGACCCCAGGCAGGCAACCGAGGC
AGGAGGAAGCTTTTATTTTTTAAACATTTGATACCAACTTGCCGGATGTG
TATAAGTGATTCCACATTGAGGAGGGGGGCAGTGGTTAATAAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_i14.b1 MSMg01no298_i14.b1 CHROMAT_FILE:
MSMg01no298_i14.b1 PHD_FILE: MSMg01no298_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:15 2005
         (444 letters)



>mm_chr11_76791954_76792796
          Length = 843

 Score =  818 bits (423), Expect = 0.0
 Identities = 438/443 (98%), Gaps = 3/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcctcttgta-ttccacacaatgtaatatgtgtatttgtgctttttcctgaaaaag 61
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctcttgtagtta-acacaatgtaatatgtgtatttgtgctttttcctgaaaaag 261

                                                                       
Query: 62  aatctactctgccctaaggagtgtttctgccatttttaaggatggaggttaatctggaac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatctactctgccctaaggagtgtttctgccatttttaaggatggaggttaatctggaac 321

                                                                       
Query: 122 caggctgtctgggcatctccaggtatcacaccattcaggctgtgaatgggactgtcatgg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caggctgtctgggcatctccaggtatcacaccattcaggctgtgaatgggactgtcatgg 381

                                                                       
Query: 182 agtccaacctatctgagtggcctgtaattgtcgaaatacagaggaagcacaccacaccct 241
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 382 agtccaacctatctgagtggcctgtaattgtcgaaatacagaggaagcgcaccacaccct 441

                                                                       
Query: 242 cagctgtcgttcatgctttagactgatggatgcaggaggctctctcactttctcattcag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagctgtcgttcatgctttagactgatggatgcaggaggctctctcactttctcattcag 501

                                                                       
Query: 302 agaagactaacttgcccatgcttctagcttcagagctttgagaacacagatctcagcatg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agaagactaacttgcccatgcttctagcttcagagctttgagaacacagatctcagcatg 561

                                                                       
Query: 362 ctgctgttacgtcacagtcactagatagatgccccacagtgcaagcttagtttcgtgaga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctgctgttacgtcacagtcactagatagatgccccacagtgcaagcttagtttcgtgaga 621

                                  
Query: 422 aacttaagatgggtaaatccagt 444
           |||| ||||||||||||||||||
Sbjct: 622 aact-aagatgggtaaatccagt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 843
Length adjustment: 10
Effective length of query: 434
Effective length of database: 833
Effective search space:   361522
Effective search space used:   361522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)