BAC Information

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BAC

Clone NameMSMg01-299B09
Chromosome11 (Build37)
Map Location 83,226,488 - 83,226,780
singlet/doubletsinglet
Overlap geneRasl10b
Upstream geneTmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1
Downstream geneOTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299B09.T7 (MSMg01no299_b09.b1)MSMg01-299B09.TJ (MSMg01no299_b09.g1)
ACCAG425958AG425959
length752755
length of high quality
(start - end)
311 (41 - 351)293 (69 - 361)
definitionCHROMAT_FILE: MSMg01no299_b09.b1 PHD_FILE: MSMg01no299_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:54 2005CHROMAT_FILE: MSMg01no299_b09.g1 PHD_FILE: MSMg01no299_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGGAGGGGTAGGTGACCTCTATTGTTGGTTCTATCTCTAGGGACATTC
CAGAACCATTTTGGGGGAAGTCTGGAAACTGCTGCTGACCCATTGTCCTT
GCCTCAGGCCAGGTGGCAGGGCAGCTTCTGAAGACTGGACTTGTCTAGAC
TTGCCCAGTTCTTGGAAACAGAAATTTTGGCCTAGTCTCCTGAACTGCCA
ATTTGAAGCCTGTCATGGAGTCAGCCTGTCTCACACCTTGTGACTTGGCT
TCTTGCCCTCCTTGGCCATGTACTGGCCATGGGAGCCCTGCTCCTCCTGG
NACCCTATCTCTTTTAATTTTCCACCCGACAGGTAAGTAGCATTGCAAAA
ATCACTGCCAGNACCCCTCTGGCTCAAAACCAAACTGTCCCCAACATAGA
GGCTGAGAACTACTGTAAAACCTCTCCATTATAAATAAAACAGAGGAGGA
TATTGAGAAACCCTGCTATTTAAGGTTGTAGTCTACCATGTCCAGATAGC
TCCTCTGAGCTTGGTGCAAAATGGAGAATTCCCTTTTCCATCAGGGTTCC
CTCTTCTCTGCCTGACCTTATTTGGGGAGCCTGACCCCCCCCCCAGACCC
TTGACCTAAGGAAGAGCACATAGTTCTAGTCAAACCAACAAGTTCGATTC
TCTCCCCAATGCACCCCCTTAAGAACCTGCCCAGCAAGTATAGGATTCCT
GG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAAGACATCTGATAAGTGTTTAATGTGTGCC
GGCCCCTGCACTGGGCATCAGGACAGAATGGTCAGCAAAATCAGATATGG
AAATTTGCTTTCAAGGAACTCATAGTCTGGCAAGAAAAGACTAATGTAGC
AGGCAGTTATTATACAATGTAATGAATGTTGCCTTTGGAGGAGATGGAGC
TGAAGCAGTTATAAAATGTAATGAATGTTGCCTTTGAAGGAGACCAGGGA
ACTGAAGCAGCAATGGTTGGAAGGATCTAACCCACTCGGGAATATGGGGT
CATGGAAGGTGTTGTCTTACACCCCCCCAGCAGGGGAAGAGGAGAAGAGG
ACACTAATTGCCCGCCCATACTCCACTCTGCCAGCCATGGCCTCATGGAC
AGACTGAGACCTGAGAAAGAGTATTCTCAGCAACTCTGGAGACCCCAATC
AGATCTTTTGCCCCAGGGCTTTTTCTTCCAGGTACCCTATTCCCCAGCCT
CAGGACTGCTTCTAGTCCCCTTGCAGTTAAATGTAAAGGTCCCCATTACC
TGCATCCCCCAGGTACCTTCCCCCCCAGCTTTTAGAACCAGGGCCTCTAC
CCCTCTCTCTGACTGGCTTGAGAGATAATTGACTGCAGGGGAAGACGACC
TGAGTTTTGCTCACTGCAGAGTCCTCTGGCCAGTATGCAGAGACCCCGGC
TAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_b09.g1 MSMg01no299_b09.g1 CHROMAT_FILE:
MSMg01no299_b09.g1 PHD_FILE: MSMg01no299_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:54 2005
         (293 letters)



>mm_chr11_83226288_83226980
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagacatctgataagtgtttaatgtgtgccggcccctgcactgggcatcaggacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagacatctgataagtgtttaatgtgtgccggcccctgcactgggcatcaggacagaa 260

                                                                       
Query: 61  tggtcagcaaaatcagatatggaaatttgctttcaaggaactcatagtctggcaagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcagcaaaatcagatatggaaatttgctttcaaggaactcatagtctggcaagaaaa 320

                                                                       
Query: 121 gactaatgtagcaggcagttattatacaatgtaatgaatgttgcctttggaggagatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactaatgtagcaggcagttattatacaatgtaatgaatgttgcctttggaggagatgga 380

                                                                       
Query: 181 gctgaagcagttataaaatgtaatgaatgttgcctttgaaggagaccagggaactgaagc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgaagcagttatacaatgtaatgaatgttgcctttgaaggagaccagggaactgaagc 440

                                                                
Query: 241 agcaatggttggaaggatctaacccactcgggaatatggggtcatggaaggtg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaatggttggaaggatctaacccactcgggaatatggggtcatggaaggtg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)