BAC Information

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BAC

Clone NameMSMg01-300B15
Chromosome11 (Build37)
Map Location 95,010,063 - 95,010,256
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4
Downstream geneLOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300B15.T7 (MSMg01no300_b15.b1)MSMg01-300B15.TJ (MSMg01no300_b15.g1)
ACCAG426683AG426684
length747762
length of high quality
(start - end)
49 (75 - 123)195 (74 - 268)
definitionCHROMAT_FILE: MSMg01no300_b15.b1 PHD_FILE: MSMg01no300_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:11 2005CHROMAT_FILE: MSMg01no300_b15.g1 PHD_FILE: MSMg01no300_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGGATCCGCGG
AATTCACTCTATATTTCCCGCAGCCCTCGAACTCACAGTGATTCACCTGC
CTCTGCCTTCCAAGAGCTGTTTATTACCCGCATGTGCTACTACCAACCAG
CCTCTGACTCTATTCTTAAGGCAGACGTAAAGAAAAGGATCTTAATATGA
ATTTGTAGGATATCAGTAACTGCTGAAGTTCTCCCAAAGGAGTAGAGGAT
ACATCAATACTTTTAGCTGTAAGTTACAGGATGAGATGGGTCTAGTTACC
ATAGCATTGTCTTGAAAAGGCCCAGCTCAGCTTCTCTCACTTTACAAGAC
AGCATCTGCACACACATTTATATGTCTTATCGCTACTCCTCCAAGTTATG
TACCTGGTCAGAGAAAAGACGTCTGCCCCTTTGGAAGTCTTTCTTATCTG
AGTCCTCACTTGGGCCCTGTGGTCAGGATCATTTAACCTGTTACTATTCT
CCTTTATTGAGTTCTTCATATGCCATTCAGCATGAATGAAAGAAGTTGCT
GACCTTGCGACTAGCCATACCCAGTTCCCATTTTCTAGCTGTTTACGGTC
TTTGATACTCGCACCTTGATCTACCCCTTTCTACCACTTCACTGGCTTTG
GAACCCCTTTTTTTTTATCCTCCCTATTTTATCCTCTTTTATCTTCTTTT
TCCCCCCTTTTTTCCCCCTTCCCTTCCCCCTTTCGTTTCCCCCTCCT
CATATCGAGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATACGCTCTGGCGCATCATCACAAGAA
CCCTGCTGTGAACGGTAGTTACCCCCTGTCTCCCTCCAACATCACCAGCC
TCACTGCACCTTCAGCATGAGGTATGAGGAACCCAAGTACTTGCTGGTAC
ACCTAGGCATCCTCTTAGGCATCCCCCACCCCAACACAACATCAGCCTCT
CAACCATAGGAAAAGTACAAGCAGTGGCTGTGAGCCAGGGAGGGCAGTGC
TTGGAGACAACAGAGACAGGCTAGTTCCGGGTTCCCTCCCCAGCACAGCC
TCCGTGTAGTTGTTCAGTTCTTCCCGCCCACCCCCCAACGCTCCTGGAGA
GGAGGGAGCAGGACTGCTACTCCAAACAAAAAGAAAGAATGATGTATGGC
GGTTCGCAAGAATCTAAGAACAGAAAACAGAATCTTGAATCCCTTATCAT
GACATACATCCCAACGACATCACTGCAGGCCGTTTGCCAATCTAGTACTG
ATTCCTCATATTCCACTTTCCCTTTCCTCCTTCCCTCTATTTCCCCTCAC
CACACTCTTCCCCTTTTTTCCCTTTATTTCCCTTTTTTTTCCCTTTCCTT
TATTTACCCCTCTTTTCCCTTTCTTCTCCCTTTTCCTTCCTTTCTCCCCT
TTTTCCCCTTTTCCCCCTATTCCCTTTTTACACCACCATATTTCTACTCC
CCCCCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_b15.g1 MSMg01no300_b15.g1 CHROMAT_FILE:
MSMg01no300_b15.g1 PHD_FILE: MSMg01no300_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:11 2005
         (195 letters)



>mm_chr11_95009863_95010457
          Length = 595

 Score =  306 bits (158), Expect = 7e-88
 Identities = 185/194 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacgctctggcgcatcatcacaagaaccctgctgtgaacggtagttaccccctgtctcc 60
           |||||||| |||||||| ||||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 atacgctccggcgcatcctcacaagaaccctgctgtgaacggtagttaccgtttgtctcc 260

                                                                       
Query: 61  ctccaacatcaccagcctcactgcaccttcagcatgaggtatgaggaacccaagtacttg 120
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 261 ctccaacatcaccagcctcactgcaccgtcagcatgaggtatgaggaacccaagcacttg 320

                                                                       
Query: 121 ctggtacacctaggcatcctcttaggcatcccccaccccaacacaacatcagcctctcaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcacacctaggcatcctcttaggcatcccccaccccaacacaacatcagcctctcaa 380

                         
Query: 181 ccataggaaaagta 194
           ||| ||||||||||
Sbjct: 381 ccacaggaaaagta 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)