BAC Information

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BAC

Clone NameMSMg01-300F15
Chromosome11 (Build37)
Map Location 15,854,473 - 15,854,774
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300F15.T7 (MSMg01no300_f15.b1)MSMg01-300F15.TJ (MSMg01no300_f15.g1)
ACCAG426863AG426864
length735740
length of high quality
(start - end)
350 (72 - 421)302 (76 - 377)
definitionCHROMAT_FILE: MSMg01no300_f15.b1 PHD_FILE: MSMg01no300_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005CHROMAT_FILE: MSMg01no300_f15.g1 PHD_FILE: MSMg01no300_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGA
ATTCTTTGTTCTGCCATAGAGCCCCATTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCT
GTTCAGGAATCTTTCCCCTGTACTCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAATTTTCAGTGCCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTAACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCACATGCGCGTGGCCTTTTTTCTGGGCCCCTCATTCCACTCCCTTGTTC
TACCTGGTTGCTTCTACACCATTACCCCGCACCTTTCATCACATTTGCCT
TGTTTTTTTGCCTCCTTTTCGCCCCGTTGATTTCCCTTTACGCCCCTTTT
ACCCCCTGTCTATACCCTTTTGTTATCCTCATCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAATAATAACTTCAAATGTATTCA
AGAAACTCAAAGAAGCATTAACAACCGAACGGTGATCCAGAAATCATAAA
CAAGAAACTGAATAAAATAGAAAAATCCAGGAAATAAAAGTAAAATTTAT
CAAGTATTGAAATAGGAATATTTATTTTTAATGTATGAGAGTTTCATAAA
TCAGTGTTGTGACATCATTGAATATATTTTTCCTTAAAAAAAGTAACACC
ATGAGTAAAATGTGAAGAACTGTTCTTAACATGAAAATGTGTTATATAGT
TATGGAAATCCAGAATTTTCTATTTATACAACGAGAATCATGCACAGATT
AATAGAACAAAGAAAGAATCTACAAATAGATCTAATCAAGCATTACCCAC
ACAAATTTGCTCACACTTTAAAAGCAATTTGTGTGGGCATGTTAATTCCT
TGAACAAGTGTATCTATAGATTTGATTGTCTACAGGCAAACAAAAATTGG
AGCTATGATTAAAAATGAAAATGTACACAAATTAACAATTTATAAATTAT
TTAAAAACTAGCATAAAACAAATCACTGACAACCATAAAATGTAAAATCA
TAAGGATTCAGAGGAAAAACACAGGAGAACAAGTTTAGTACCAATTGCTA
TATAAAAAATTTCCCATTGCGAAACTGATGCAATTGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_f15.g1 MSMg01no300_f15.g1 CHROMAT_FILE:
MSMg01no300_f15.g1 PHD_FILE: MSMg01no300_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:29 2005
         (302 letters)



>mm_chr11_15854273_15854974
          Length = 702

 Score =  514 bits (266), Expect = e-150
 Identities = 293/302 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaataataacttcaaatgtattcaagaaactcaaagaagcattaacaaccgaacggtga 60
           |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 502 aaaacaataatttcaaatgtattcaagaaactcaaagaagcattaacaacagaatggtga 443

                                                                       
Query: 61  tccagaaatcataaacaagaaactgaataaaatagaaaaatccaggaaataaaagtaaaa 120
           ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 442 tccagaaattataaacaagaaactgagtaaaatagaaaactccaggaaataaaagtaaaa 383

                                                                       
Query: 121 tttatcaagtattgaaataggaatatttatttttaatgtatgagagtttcataaatcagt 180
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 382 tttatcaagtattgaaataggaacaattatttttaatgtatgagagtttcataaatcagt 323

                                                                       
Query: 181 gttgtgacatcattgaatatatttttccttaaaaaaagtaacaccatgagtaaaatgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttgtgacatcattgaatatatttttccttaaaaaaagtaacaccatgagtaaaatgtga 263

                                                                       
Query: 241 agaactgttcttaacatgaaaatgtgttatatagttatggaaatccagaattttctattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaactgttcttaacatgaaaatgtgttatatagttatggaaatccagaattttctattt 203

             
Query: 301 at 302
           ||
Sbjct: 202 at 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)