BAC Information

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BAC

Clone NameMSMg01-301G07
Chromosome11 (Build37)
Map Location 47,303,989 - 47,304,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
Downstream geneLOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301G07.T7 (MSMg01no301_g07.b1)MSMg01-301G07.TJ (MSMg01no301_g07.g1)
ACCAG427610AG427611
length730731
length of high quality
(start - end)
193 (122 - 314)448 (65 - 512)
definitionCHROMAT_FILE: MSMg01no301_g07.b1 PHD_FILE: MSMg01no301_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:47 2005CHROMAT_FILE: MSMg01no301_g07.g1 PHD_FILE: MSMg01no301_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCCAGCTGCCCACTCTGGTCAAGCCTTTCATGGCACAATTTCAGTTGG
AGCTATGTCTTATTTAACCTGTGCTTATTTTCTCTCAGAGTGGGTAGCCA
ACAAGAATCTCATAAGTGTGGGGAATTGCAGGCTGGTCTCCAGTTGAGCT
GAGGTCTGAACCCCAATGGTCATAATTCACCTACATGCCATGTAAGGCAT
TTCCTCATGCTCCTAGAACTCCAGCCCCTGCCAAAGGTACCACCTCCCAC
AGCCCCCACAAGAGATTCTTGTTCAGTAGTCATATATGTAATGACCTAAG
CTACTGTATCTCTTGCCCCNAATCCTNANCACCTACTTAGCAACAGTGAA
GACCATAATTAGGTGTGCTCAAACCCCACCTTGCTCTTATTCCTTTGTCC
TCTTACCCCTCAATTCTCTCACTTCTCTCTCTTCTTCCCTTTCTCTTTGT
CTTCTCCTCTCCTCTCTTTCTCTTTCTCTCATTTTCTCTCTAGCCTTCCC
CCCCTCTGTCTTCTACCTTCTCTCTTTCCCCTACATTTCTATAATAAAGT
TCTTAAACCATAGTCTCTGCTCTTTCTTGTTTCCACTGAGCTCTTTGGTC
AGTGCTGGTAACCTCTTCCCCTATTTCTCTCTCTCCTATTACCCTGGTGG
CTCTAGTATTATTACCCCCCCGTCGGGTTG
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCAGAAATTCTGGACCAATAAGGACTACATAGTGAGACACTA
TCTTAAATATATAATACACATATGCATGTGTGTATGTCTGTGTGTGTGTA
TATATACATATGTATATATAGATGAATATATTCATCTATATATACATGTT
TTAAAATTGATTATTTCTACTTCTAACTTTATCTTCAAAAAAATGGTGAA
ACTCTTGTCATGATTTCTTTAATGAAGGAATTGATGTTTTAATAGAAGTG
TAGTATCTGTAACAATGATTTTTTTGCTCAAGTGATTATTTGATATTTTC
CTTTCTTCACCATAAGAGGCATTGTACAAATTGTTTCTGAAGAAGGAACA
TAGATGGCCGACTCTCATATTTCTTCTACAGATATCAAAATCGAAAACGT
ACATTGGCTTGGCATGCATATTACATGTAATATGTTACATACAACATAGC
TTTAACAGAACTTAAGTTGATTAGATTCACAATACAGGAAGGAACATAAG
CTCCCTTTCAGCTCATTGTTCACAATCATTGCCTGGACATTCCTTTTAAC
ATATCTTAATGAAATTGAATTGAATTTGTTCAAAAAAAAAAAAGCCTTGT
AGGTTGGATCTTATTCCTACTCTACTCTTTGCTCATGACTTGTACCAATA
CTCATATTGATTGTTATCCTTATAGTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_g07.g1 MSMg01no301_g07.g1 CHROMAT_FILE:
MSMg01no301_g07.g1 PHD_FILE: MSMg01no301_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:47 2005
         (448 letters)



>mm_chr11_47303654_47304503
          Length = 850

 Score =  714 bits (369), Expect = 0.0
 Identities = 431/455 (94%), Gaps = 10/455 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctggaccaataaggactacatagtgagacactatcttaaatatataatacacatatg 60
           |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 787 attctggaccaataaggattacatagtaagacactatcttaaatatataatacatatatg 728

                                                                       
Query: 61  catgtgtgtatgtctgtgtg--tgtgtatatatacatatgtatatatagatgaatatatt 118
           ||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||
Sbjct: 727 catgtgtgtatgtctgtgtgtatatatatatatacatatgtatatatagatgaatatatt 668

                                                                       
Query: 119 catctatatatacatgttttaaaattgattatttctacttctaactttatcttcaaaaaa 178
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 667 catctatatatacatgttttaaaattgattatttctacttctacctttatcttcaaaaaa 608

                                                                       
Query: 179 atggtgaaactcttgtcatgatttctttaatgaaggaattgatgttttaatagaagtgta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atggtgaaactcttgtcatgatttctttaatgaaggaattgatgttttaatagaagtgta 548

                                                                       
Query: 239 gtatctgtaacaatgatttttttgctcaagtgattatttgatattttcctttcttcacca 298
            ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 547 atatctgtaacaatgacttttttgctcaagtgattatttgatattttcctttcctcacca 488

                                                                       
Query: 299 taagaggcattgtacaaattgtttctgaagaaggaacatagatggccgactctcatattt 358
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 487 taagaggcattgtacaaattgtttctgaagaaggaacatagacggccgactctcatattc 428

                                                                       
Query: 359 cttctacagatatcaaaatcgaaaacgtacattggcttg---gcatgca-tattacatgt 414
           ||||||||||||||||||| |||||||| ||||||||||   ||   || | ||||||||
Sbjct: 427 cttctacagatatcaaaattgaaaacgtccattggcttgctagc---cactgttacatgt 371

                                              
Query: 415 aa-tatgttacatacaacatagctttaacagaact 448
           || ||||||||||||||||||||||||||||||||
Sbjct: 370 aactatgttacatacaacatagctttaacagaact 336



 Score = 74.2 bits (38), Expect = 2e-17
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 96  atgtatatatagatgaatatattcatctatatatacat 133
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 653 atgtatatatagatgaatatattcatctatatatacat 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 448
Length of database: 850
Length adjustment: 10
Effective length of query: 438
Effective length of database: 840
Effective search space:   367920
Effective search space used:   367920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)