BAC Information

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BAC

Clone NameMSMg01-302B02
Chromosome11 (Build37)
Map Location 91,323,617 - 91,324,278
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976
Downstream geneKif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302B02.T7 (MSMg01no302_b02.b1)MSMg01-302B02.TJ (MSMg01no302_b02.g1)
ACCAG428073AG428074
length736748
length of high quality
(start - end)
617 (45 - 661)663 (76 - 738)
definitionCHROMAT_FILE: MSMg01no302_b02.b1 PHD_FILE: MSMg01no302_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:37 2005CHROMAT_FILE: MSMg01no302_b02.g1 PHD_FILE: MSMg01no302_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTTTATTCCTATACCCCATTTATTGATTGGGTTGTTTGGTTTT
TTTTTTTTTAGTGATTAACTTCTTGAGTTCTTTATATAATTTGGATATTA
GTCCTCTATCAGATGTGGGGTTAGTGAAGATTTTTTTTCCCAATCTGTAG
GTTGCCAATTTGTCTTATCGACTATGTCCTTTGCCTTACAGAAGCTTTCC
AGTTTCATGAGATCCCATTTATTATCAATTCTTGATCTTAGAGCCTGAGC
CATTGGAGTTTTATTTAGGAAATTTTCCCCTGTGCCAATGAGTTCAAGCT
TCTTTCCCACTTTCTCTTCTATTAGATTCAGTGTGTCTGGTTTTATGTTG
AGGTCCTTGATCCACTTGGACTTGAGCTTTGTACAAGGTGACAAATATGG
GTCTATTTTCATCCTGCCACATGCAGACAGCCAGTTAGACCAGCACTATT
TATTGAAGATGCTTTCTTTTTTCCATTGTATATTTTTGGCATCTTTGTCA
AAGATCAAGTGATCATAAGTGTGTGGTTTTATTTCTGGGTCTTCAATTCT
ACTTCATTGATCAGCGTATCTGTCTCTGTGCCAATACATGCAGTTTTTAT
CACTATTGCTCTGTAGTAAAGCTTGAGGTCAGGGATGGTGATTTCCCCCA
GATGTTCTTTTATTGTTGAGAACTGTTTTCACTATT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATTCTTTCACTGTAAAGTGTCAA
AAATGACACAGAGCTGTATTGCTCGCGGGATCATTTCTTTTAAATCCAGA
CTAAAAATCAAAGCCTACATATTTCAAGTTGCAGTCATTCCTACCCTGAG
CCTTCCTGACAGACGTGCTTGTACAGCTGTACAATGAGAGACAGACAAAT
GTATGTGATAAAACAAGTGCAGTGGTAAAAACAAGAACTGTTTTGTAGCC
TTGAAATAGGTGCAACATAACGAAAACCCATAAATCCATTCGTTCATGTC
AGTACAGTTCAAAGAATATAGGGAACAATAGAAGCTGATCTCGGAATTGT
TTGTGCAGAATATCCGGGTGACATGTTGGGTCTTATATTTTTTAAGAATT
AAAAATGAAGCTACATTTCAAGGATACACACTTAGATACTAAAACTACTA
CTGAAAAGAGAAGAATTTTGGCAAGAGTCAGGTCATTGATAATGTGCATT
GCCAAGGCAGGCAGCTGTCTACACAGCATCCTTACAGACCACAGGCAAAG
ACCTCTCTTTTTCACAATAAGTGGTAGTTACAGTATGGGTTTCTGAAAAT
CTTTGTATTTATAAACAACTTTTAAAGTATCTGCATGCTACAAACACTTT
TTAACAGGCAATAGATTTCTTTCCAATAAGCAAGGTCTGTAAAGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_b02.g1 MSMg01no302_b02.g1 CHROMAT_FILE:
MSMg01no302_b02.g1 PHD_FILE: MSMg01no302_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:37 2005
         (663 letters)



>mm_chr11_91323417_91324478
          Length = 1062

 Score = 1108 bits (573), Expect = 0.0
 Identities = 642/665 (96%), Gaps = 5/665 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattctttcactgtaaagtgtcaaaaatgacacagagctgtattgctcgcgggatcatt 60
           ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 862 aaattctttcactgtaaagtgtcaaaaatgacacagagctggattgct-gggggatcatt 804

                                                                       
Query: 61  tcttttaaatccagactaaaaatcaaagcctacatatttcaagttgcagtcattcctacc 120
           |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct: 803 tcttttaaatccagactaaaaatcgaagcctacatatttcaaggtgcagtcattccttcc 744

                                                                       
Query: 121 ctgagccttcctgacagacgtgcttgtacagctgtacaatgagagacagacaaatgtatg 180
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 743 ctgagccttcctgacagacatgcttgtacagctgtacaatgagagacacacaaatgtatg 684

                                                                       
Query: 181 tgataaaacaagtgcagtggtaaaaacaagaactgttttgtagccttgaaataggtgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgataaaacaagtgcagtggtaaaaacaagaactgttttgtagccttgaaataggtgcaa 624

                                                                       
Query: 241 cataacgaaa-acccataaatccattcgttcatgtcagtacagttcaaagaatataggga 299
           |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 623 cataac-aaagacccataaatccattcgttcatgtcagtacagttcaaagaagataggga 565

                                                                       
Query: 300 acaatagaagctgatctcggaattgtttgtgcagaatatccgggtgacatgttgggtctt 359
           ||||||||||| |||||||||||||| ||||||||||||  |||||||||||||||||||
Sbjct: 564 acaatagaagcagatctcggaattgtatgtgcagaatatttgggtgacatgttgggtctt 505

                                                                       
Query: 360 atattttttaagaattaaaaatgaagctacatttcaaggatacacacttagatactaaaa 419
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 atattttttaagaattaaaactgaagctacatttcaaggatacacacttagatgctaaaa 445

                                                                       
Query: 420 ctactactgaaaagagaagaattttggcaagagtcaggtcattgataatgtgcattgcca 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 ctactactgaaaagagaagaattttggcaagagtcaggtcattgataatgtgcatttcca 385

                                                                       
Query: 480 aggcaggcagctgtctacacagcatccttacagaccacaggcaa-agacctctctttttc 538
           ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct: 384 aggcaggcagctgtctacacagcgtccttacagaccacaggcaata-acctctctttttc 326

                                                                       
Query: 539 acaataagtggtagttacagtatgggtttctgaaaatctttgtatttataaacaactttt 598
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 acaataagtggtagttacagtatgggtttctaaaaatctttgtatttataaacaactttt 266

                                                                       
Query: 599 aaagtatctgcatgctacaaacactttttaacaggcaatagatttctttccaataagcaa 658
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 aaagtatctgcatgctacaaacactttttaacaggcaataaatttctttccaataagcaa 206

                
Query: 659 ggtct 663
           |||||
Sbjct: 205 ggtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space:   686956
Effective search space used:   686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)