BAC Information

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BAC

Clone NameMSMg01-302I08
Chromosome11 (Build37)
Map Location 60,982,644 - 60,982,882
singlet/doubletsinglet
Overlap geneUsp22
Upstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b
Downstream geneLOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302I08.T7 (MSMg01no302_i08.b1)MSMg01-302I08.TJ (MSMg01no302_i08.g1)
ACCAG428387AG428388
length733732
length of high quality
(start - end)
239 (129 - 367)295 (72 - 366)
definitionCHROMAT_FILE: MSMg01no302_i08.b1 PHD_FILE: MSMg01no302_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:10 2005CHROMAT_FILE: MSMg01no302_i08.g1 PHD_FILE: MSMg01no302_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGTAA
TTCCATGTGATTTCTCCAGTGAGGGGAGACAAAACAAAACCCATTTTCTG
TCACCATTCACAGCAAGAATGGACCCCAACAGAATCAGCCACGGATACTA
CATCACCAGGCAAAATAACAATGGTACTAGAAAACTGCCAAATACACCAA
GTACCTCCCAAATCAACGAACAGATAAACAATGACACCACTCTGTAACCA
AGATAAGCTGATGTGGGCAAGGACATGGGCCACAGGCTACTGAATACGCA
GAACAAGCAAATCCCTGCAGATTGTGGCTGGGGACGGCAGGGAACAGATG
TAGTGTGCCAAAATCTGGTTTAGGTGGACACAAAACCTCATAGCACTGAA
TACTCCAGCTCATACTCTCCTGTTCCTTCACCCATGAAGGGCAGCCTCCT
GCTCTGTCTAATGCACCTGGACTACTAGGTTTCCGGTTTGTTTTTGTTTG
TTTTGCTGTTGTTGTTTTCTGTTTTGTTTTGTTTTTTTGCTAAATCTGTA
ATTAGGTTTGGATCCAGAGTGCCCAGTAGGCCTACCTACTGAACATCTGG
TNCCAGCTGCCGCCACCACCATCATCACCATCATCACCTGGNTCCAGCCA
TCATCATCATCATCATCATTATTATATTATTATCTTTCTGATGATGATGA
TGAAGAAACTATTATTATAGGTTAGCTCAGGGA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGGGAAGCTGTGACTACAGAGGTTGGTT
GACTCAAGCTTCACTGATGTGGAGAGGCTGCAATGCTGTACAGCCACAGC
CAAGTCACCTTGGGCCACCTTTAGACCCCTTACGAGCCATTTATTCCCTG
CCTCTGTGCATCACCTAACATCTTTGTGGCCATCAGGCACATCCTATGGA
ATGAAGGCACCAACTGCTAGTCCCCACAAACCAAAAGGCTACTAATCCCA
TCAAAGTGCGTGTGAGGTCTAGAACAGAGGTCCCCCTCCCTTTACTGTAA
CCCCTCTACCTGATTATTTCACCCACCCCCCCCCAAAGTGAGTTGACTTA
TGATTTTGTTCTGTTGTTATAAAACTTTTCTGAAACTGCTCCCTCGCTAG
GACATGGCATTTGGAGAGTCCCGAATCCGTGTCCCATGCTGTAGTGACTC
ATATCCAAGTCCTGAATTAACTATCTCTCTGGTTTCTTCGAAGTGTCTGT
TACTTAGGGTTTCTATCACTGCAGTGAAACACCATGAGCAAAAAGCAAGT
CGAGGAGGAGAGGGTTTATTCAGCTTACACTTCCCCATTGCTGTTCATCC
TCAAAGGAAGTCAGGACAGGGAACTCAGTAGCGGCAGGGAACCTGTAAGC
AAGTAGCTGAAGGCAGAGGCCCACGGATAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_i08.b1 MSMg01no302_i08.b1 CHROMAT_FILE:
MSMg01no302_i08.b1 PHD_FILE: MSMg01no302_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:10 2005
         (239 letters)



>mm_chr11_60982444_60983082
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaatcagccacggatactacatcaccaggcaaaataacaatggtactagaaaactgc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaatcagccatggatactacatcaccaggcaaaataacaatggtactagaaaactgc 260

                                                                       
Query: 61  caaatacaccaagtacctcccaaatcaacgaacagataaacaatgacaccactctgtaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatacaccaagtacctcccaaatcaacgaacagataaacaatgacaccactctgtaac 320

                                                                       
Query: 121 caagataagctgatgtgggcaaggacatgggccacaggctactgaatacgcagaacaagc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 caagataagctgatgtgggcaaggacatgggccacaggctactgaacacgcagaacaagc 380

                                                                      
Query: 181 aaatccctgcagattgtggctggggacggcagggaacagatgtagtgtgccaaaatctg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatccctgcagattgtggctggggacggcagggaacagatgtagtgtgccaaaatctg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)