BAC Information

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BAC

Clone NameMSMg01-302M23
Chromosome11 (Build37)
Map Location 61,712,162 - 61,712,451
singlet/doubletsinglet
Overlap geneAkap10
Upstream geneGtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
Downstream geneD630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302M23.T7 (MSMg01no302_m23.b1)MSMg01-302M23.TJ (MSMg01no302_m23.g1)
ACCAG428594AG428595
length745745
length of high quality
(start - end)
267 (430 - 696)292 (67 - 358)
definitionCHROMAT_FILE: MSMg01no302_m23.b1 PHD_FILE: MSMg01no302_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:32 2005CHROMAT_FILE: MSMg01no302_m23.g1 PHD_FILE: MSMg01no302_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACC
TACTTCAGCGCCATGCCTGCCATGATAAGAATGGATTGGACTTCTGAAAT
TGTAAGCCAGCGCCCATTAAATGTTTGCCTTTATAAGAGTTGCCTTGTCA
TGGTGTCTCTTCAGAGCAATGGTTACCCTAACTAAGACAACCATGCATGG
GAAATGGCCAAAGCTGGCTAAGAACAATACAAGTAAGGGCCTGTGAACAC
TATGGATGTCCCCTCCCTCTTTAAGATTAAGAAAGGATATCCTGACATAG
GTTACAGGTTGGATGGACCTCGAAGACACATGTCAAGAGATATATCACAG
AATGTTATTCATACCACCCCCCCCCACCAGCTATAACAGCTTACACATAG
GGACAGAAGATAGACGAGTGAAATAGAAATTGTGGGAGGAGACTGAGTTG
CAACTCCGTGTATAACAATGTCAGTGAAGCCATGGTAGCAGGAGCTGGAG
AAGCCAGCTGATCTAATTGTATCTGCAGAGAAGAAGCAAAGTACTGAACT
GGAGAGACAGCTCAGCAGTTAGGAGTGCTTGCCCCACAGTCCTGAGGATT
GAAAGTTTGGATCCCAGCACCCATTAACAAGCCAGGCACCCCACCCATGC
CTGTACTCCAGCTCCAAGTGGGGCAGATTCAGGAAGATGCTGAGGGTTGT
TGGGTTCTAGGCTGTTATGTATAACACCCCGAGGGACCCAGTGAC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTAATCCCCAAGTCAACCCTTTTAATTTGTCT
ATGGAGACAAACAACAAATTTCCTCACAAAAAAAAAAAAAACAAATGTAA
AGAATTTAATTTAATCAGGGAACAGGACTATGGTGACAGAGCTGGCTACA
GTCTTATCATTTGCCTGAGCAGATGTTTTAATTATATTTATAGTCAGATT
TTTTTTTCCCAAATTCTTATCTTTGGTGAAAACTACTGAGAAATTGGCTG
GTATAGTCCAGAGGTAGAGGACATGCTTAGCATGTACAAAGCCATGGGTT
CAATTCCAATTACTTACCAANACCCCCCCAATTCCTGAAAGAAACAACAA
CAAACCCCACCCCCACTATTAATAAAAAAAACAGGTTAAGGGGAGGATAC
ATCTACACCCTTTCCAATGTGTTCCAATTATTTTAGTGTACGTCCTATTG
TGTTCCAGAAACATTTTTTATTACCCAAATATAAGTCCTCTTTCCTTGTC
CTTATACTAGGGACGATGCTGGTTCCTAAGACAGGCTCTTCGGCTGGGTT
CTGCAAGCCCTCTTTCCATCTTGGTCCTCGCTAAGGGCTGTGTTTCCCTG
CTTGCCTGGACAACTCGCATTGGTTCTTTTTCTTGCTCTTTTCATGAATA
TATGTATGCACAATCACATGTACATGTGCCAGTGATTATGCATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_m23.g1 MSMg01no302_m23.g1 CHROMAT_FILE:
MSMg01no302_m23.g1 PHD_FILE: MSMg01no302_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:32 2005
         (292 letters)



>mm_chr11_61711962_61712652
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaatccccaagtcaacccttttaatttgtctatggagacaaacaacaaatttcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaatccccaagtcaacccttttaatttgtctatggagacaaacaacaaatttcctca 260

                                                                       
Query: 61  caaaaaaaaaaaaaacaaatgtaaagaatttaatttaatcagggaacaggactatggtga 120
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaaagaaaaaaacaaatgtaaataatttaatttaatcagggaacaggactatggtga 320

                                                                       
Query: 121 cagagctggctacagtcttatcatttgcctgagcagatgttttaattatatttatagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagctggctacagtcttatcatttgcctgagcagatgttttaattatatttatagtca 380

                                                                       
Query: 181 gatttttttttcccaaattcttatctttggtgaaaactactgagaaattggctggtatag 240
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttttttt-cccaaattcttgtctttggtgaaaactactgagaaattggctggtatag 439

                                                              
Query: 241 tccagaggtagaggacatgcttagcatgtacaaagccatgggttcaattcc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccagaggtagaggacatgcttagcatgtacaaagccatgggttcaattcc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)