BAC Information

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BAC

Clone NameMSMg01-303L04
Chromosome11 (Build37)
Map Location 114,857,733 - 115,028,988
singlet/doubletdoublet
Overlap geneCd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1
Upstream geneSdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik
Downstream geneNat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303L04.T7 (MSMg01no303_l04.b1)MSMg01-303L04.TJ (MSMg01no303_l04.g1)
ACCAG429214AG429215
length727728
length of high quality
(start - end)		652 (46 - 697)646 (79 - 724)
definitionCHROMAT_FILE: MSMg01no303_l04.b1 PHD_FILE: MSMg01no303_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:40 2005CHROMAT_FILE: MSMg01no303_l04.g1 PHD_FILE: MSMg01no303_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:40 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(114,857,733 - 114,858,378)(115,028,434 - 115,028,988)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCCAGAGCCAGACTTAGAGGAGGAGAGTGCCCTGAATGCTGTGTT
CTGTGTGTGGCCTTGTCTCTCAATCATGAGCTCACGGCAGCTGTGGTTAC
CACACAAGACCAAGTCAGCAAAATCAGTTAGCTAATTATGTATATGGCTG
TTCCATCTGAATGGACACCTGCATGCCAGAAGAGGGCATCAGAGCTCTTT
ACAGATGGTTGTGAGTTACCTTGTGGTTACTGGGAATCTAACTCAGGACC
TCTAAAAGAGTAGCCAGTACTCTTAATCTTTGAGCCATCTATCTAGACTG
AAGTCATTTAAATATATAGGTATTTATTTGGTAAATTCATTTATGTGTTT
GATACACCACAGAGAATCTTCTAAAAGTCTCAGAGCATTCTCAAGAAATA
TGTATTTACTGGCTGTCCTCAGCCACCAGAGGAGCTGTGTTTAGGGACAG
GGCCTTGATGTCAACAGACTTCACTGGTTCTCATAACAGGGCTGAGTGCT
GCTTCCCCCAGAGCACTTCTGAGGCCTGTTCACCCAGAGGACAGCACCAA
GCATGCTCAGGAACAGGAACAACTTCAGAGACACCAGGACCCGGAAGTAG
AGGCTGCTCCGAAGAGACCTGTAAGGGACAGAGTCACAATAAGCTCACTT
CCCAGAAGGTGACAATAATGCCCTGTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTCTGGGTGGACTGGTTGC
ATAAACAAGCCCAGGTGTGCTGGTCCGGGATGAACTGGGATAAAGGTCCT
TTATAGCTACTATATATTCACTCATTAATTCAAATAACATTTATTGAACA
CCTCCCTAGAGTAGGTTCAGAGCTGAGTTGGTAACAGCGATTGGAATAAC
CCAAGGCTGTGCCCCGGGGCTTCCCATGTAGTAGAGGCCATCAGCACAGT
GTGTACAGGGCCACAGGGATACACAGCTTGCCTGAGGGGATTTGAATCTT
TGCTGTGGCCGAGAGTAAGAGGGTGGGTAGCAAATTTGTGGAGGTCTGTG
GCACTACATAGAACTATTATTGTTCTTATTAAATTTTGATGCAGAATCCC
ACTCTGTCCCCAGTCTCTGGCTTGAACTGGCAATCCTCCTGCCTTTACCT
CCCATGTGCTGGGTTTATAGGCCTGAGCCACCACACCCAGCTCATCACAT
AAACACTAAACAACAGTGATCTTTGAGCGCTTCTGAGGGCTGGGCTTGGC
CAGCTGTACCTGCCGAGGTAGGGAGAAATCATCACTGTGAACTATTTATT
ACTTCAAATGCCAACAATCAACATTTACTGAGCACTTACTTAGTGCCAGG
TATTGAGTGACTTACACACACATCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_l04.b1 MSMg01no303_l04.b1 CHROMAT_FILE:
MSMg01no303_l04.b1 PHD_FILE: MSMg01no303_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:40 2005
         (652 letters)



>mm_chr11_114857527_114858578
          Length = 1052

 Score = 1187 bits (614), Expect = 0.0
 Identities = 638/646 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccagagccagacttagaggaggagagtgccctgaatgctgtgttctgtgtgtggc 66
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 207 gaattccagagccagagttagaggaggaaagtgccctgaatgctgtgttctgtgtgtggc 266

                                                                       
Query: 67  cttgtctctcaatcatgagctcacggcagctgtggttaccacacaagaccaagtcagcaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttgtctctcaatcatgagctcacggcagctgtggttaccacacaagaccaagtcagcaa 326

                                                                       
Query: 127 aatcagttagctaattatgtatatggctgttccatctgaatggacacctgcatgccagaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatcagttagctaattatgtatatggctgttccatctgaatggacacctgcatgccagaa 386

                                                                       
Query: 187 gagggcatcagagctctttacagatggttgtgagttaccttgtggttactgggaatctaa 246
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 387 gagggcatcagagctctttacagatggttgtgagtcaccttgtggttactgggaatctaa 446

                                                                       
Query: 247 ctcaggacctctaaaagagtagccagtactcttaatctttgagccatctatctagactga 306
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 447 ctcaggacctctaaaagagtagccagtactcttaacctttgagccatctatctagactga 506

                                                                       
Query: 307 agtcatttaaatatataggtatttatttggtaaattcatttatgtgtttgatacaccaca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agtcatttaaatatataggtatttatttggtaaattcatttatgtgtttgatacaccaca 566

                                                                       
Query: 367 gagaatcttctaaaagtctcagagcattctcaagaaatatgtatttactggctgtcctca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gagaatcttctaaaagtctcagagcattctcaagaaatatgtatttactggctgtcctca 626

                                                                       
Query: 427 gccaccagaggagctgtgtttagggacagggccttgatgtcaacagacttcactggttct 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gccaccagaggagctgtgtttagggacagggccttgatgtcaacagacttcactggttct 686

                                                                       
Query: 487 cataacagggctgagtgctgcttcccccagagcacttctgaggcctgttcacccagagga 546
           ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 687 cataacagggccgagagctgcttcccccagagcacctctgaggcctgttcacccagagga 746

                                                                       
Query: 547 cagcaccaagcatgctcaggaacaggaacaacttcagagacaccaggacccggaagtaga 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 747 cagcaccaagcatgctcaggaacaggaacaacttcagagacaccaggacccagaagtaga 806

                                                         
Query: 607 ggctgctccgaagagacctgtaagggacagagtcacaataagctca 652
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggctgctccgaagagacctgtaagggacagagtcacaataagctca 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_l04.g1 MSMg01no303_l04.g1 CHROMAT_FILE:
MSMg01no303_l04.g1 PHD_FILE: MSMg01no303_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:40 2005
         (646 letters)



>mm_chr11_115028434_115029479
          Length = 1046

 Score = 1050 bits (543), Expect = 0.0
 Identities = 552/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctctgggtggactggttgcataaacaagcccaggtgtgctggtccgggatgaactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 555 catctctgggtggactggttgcataaacaagcccaggtgtgctggtcggggatgaactgg 496

                                                                       
Query: 61  gataaaggtcctttatagctactatatattcactcattaattcaaataacatttattgaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 gataaaggtcctttatagctactatatattcactcattaattcaaataccatttattgaa 436

                                                                       
Query: 121 cacctccctagagtaggttcagagctgagttggtaacagcgattggaataacccaaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cacctccctagagtaggttcagagctgagttggtaacagcgattggaataacccaaggct 376

                                                                       
Query: 181 gtgccccggggcttcccatgtagtagaggccatcagcacagtgtgtacagggccacaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgccccggggcttcccatgtagtagaggccatcagcacagtgtgtacagggccacaggg 316

                                                                       
Query: 241 atacacagcttgcctgaggggatttgaatctttgctgtggccgagagtaagagggtgggt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atacgcagcttgcctgaggggatttgaatctttgctgtggccgagagtaagagggtgggt 256

                                                                       
Query: 301 agcaaatttgtggaggtctgtggcactacatagaactattattgttcttattaaattttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agcaaatttgtggaggtctgtggcactacatagaactattattgttcttattaaattttg 196

                                                                       
Query: 361 atgcagaatcccactctgtccccagtctctggcttgaactggcaatcctcctgcctttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atgcagaatcccactctgtccccagtctctggcttgaactggcaatcctcctgcctttac 136

                                                                       
Query: 421 ctcccatgtgctgggtttataggcctgagccaccacacccagctcatcacataaacacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctcccatgtgctgggtttataggcctgagccaccacacccagctcatcacataaacacta 76

                                                                       
Query: 481 aacaacagtgatctttgagcgcttctgagggctgggcttggccagctgtacctgccgagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  aacaacagtgatctttgagcgcttctgagggctgggcttggccagctgtacctgccgagg 16

                          
Query: 541 tagggagaaatcatc 555
           |||||||||||||||
Sbjct: 15  tagggagaaatcatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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