BAC Information

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BAC

Clone NameMSMg01-304L20
Chromosome11 (Build37)
Map Location 90,933,010 - 90,933,807
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304L20.T7 (MSMg01no304_l20.b1)MSMg01-304L20.TJ (MSMg01no304_l20.g1)
ACCAG429928AG429929
length1,2721,275
length of high quality
(start - end)		798 (92 - 889)806 (81 - 886)
definitionCHROMAT_FILE: MSMg01no304_l20.b1 PHD_FILE: MSMg01no304_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:47 2005CHROMAT_FILE: MSMg01no304_l20.g1 PHD_FILE: MSMg01no304_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGGTTNNNNNNNNNGCACTGGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCCCAGCAACCTGTGCCCACATTGAGACTAAAGTCTGGTA
TTTGAACCTTGCTTTGACTCTGTTCATTTGCATTTTCCTGGAGGGCAGAA
GTGGAGAACTTAGTCACCAAGGAGAGCTTGTCTCCTCTATATTCAGTGAG
TTATATAGGAGTTGCTTTCAGCAATAGACTCTTACTGTCAGTTTGAGGAG
AGCAACTTATAGTCTTGCAACAGCCTCTCTTGTTTAGGGGTTCCTGTGGG
AACTCTTTGGCCAATAACTTAATTGGATGTTAACCAATTCCAGTATTAAA
AAGCTTCATTTAGTGACAAGAGATGTCCAATTGAGGCCATGTCTCCCCCA
TTATTTGGTGGTTCCATTTAGATTGCCTGCATACATGAATGTAGTTTAGG
AAACTTCTACTTTATTAGGTTTCCATACTACCCCTCAAATGGCCCTTAAG
ACAGGCATCTCTCTCTGTATTCTCTCACCTCCCTGCTCTCTTCCCCTCCA
TTCTTGATCCATACTTTCCAGGTTCCACCCAAACTCCTATCGCCATAACT
ATCTATTCTATTTCCCTTTTCTAACAAGATCTATATGTCCTCTCTAGTTT
CCTAATCTGCACCTATCTTCTGTGGTGCTACAGATTTTAACTGGGCTCTC
ATAGACTTAATAGATAATATCTATATATAAGTAAGTACATACCACTTTTG
TTTTTCTGGATCTTGGTTACCACACTCAGGATATATTTTTTAATCTAGTT
CAATCAATTTATTTGTGGATTTCAAGATTTCATTCTTTTTAATAGCTAAG
TCTACTTCCTCATATAAATGTATGACATATTCTTTATCCTTCTACCTGCT
GAGGGACATCTAGTTCGGTTCTAATCTCTATTCTGAATAAAGCACCAATG
AGCATGGCTGAACAACTGTCTTTGTGAAAGAAGGAACACCTTTGGGGGGA
TAGCTGCCTCTTAAGGAAAACTATTTTTTTTTCTGAGGGGCCCGACACGG
GTTTCCTTAGGGGGGGCCCTTTTTTTCCTCCCAACCGGGGGGGAGGGGGG
TTTTTTTTATTCCAAACTCCCAACAGGGGGGGGGTTGTGTTTTTTTATCC
TTCTGCTTACAAAAAAAAAGGGTCAAAAAGTTTTGCCTTCTTTTTTATTT
CAAAAAGTGGAGGTGTTTTTTGGTTCTCCCCCTGGGGGATTTCCATTGGC
GCCCTTTCCTTCTTTTTTTTTT

NCCCAGTATTNNNNNNNATTGAAGTGAGGCTGGGGCGCCXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAACCTTTCTCTTCCC
ATACCTGGTCTCGTATCCCTTCCCTCCTACCACTCAGACCCATCCCTTCC
TTTGCCTCCTGCGATTATTTTGTTCCCCCTTCTAAGTGGGTTTGAAGTAT
CTACTTTTTGATCTTCCTTCTTGTTAAGTTTCATATGGTCTGAGTTGTGG
GTATTCTGAGATTTCAGGATAATATCCACTTATCAGTGAGTACATACCAT
GTGTGTTCTTTTGGGTCTGGGTTACCTCACTCAGATGGCATTTCTAGTTT
CCATCCATTTGTCTACAACGCTCACGATGTCGTCATTTTTAATAGCTGAG
AAGTATTCCATATAAAGAAATACATCTTTTGTTTATTTTTATTTCCAAAG
GCATGTGAAGCATTCGAACAAAGGAATGTGAAATGTTCATTTAAGGAAGG
ATGCAGCATTTTCTGCGCTGTGTCAGGTCCTTCTTGAGCATCATTTGTTT
CCTAATCAGAATAACAGAGACCCACAGAGAGTAAATTTAAATCCTGAGGG
GTTCCAGATGAAAAAGACTTTCTTTGAGGGAAATTATGCTCAGTGGAGGT
GAACCAGGCTACCCTTCTTGACATTGCAATGAGTGAGCAGAAGGCAATCA
ACAATGTATTTGTAGACTTTTACTTTTTAATTCTTTTTTTCCTCTTATCT
TTGTTTAAATATAAAATAGGCATATGTTTTAAGGATACTCACATATCTAT
GTAGGAAAGTAAATAAGTGAGCAGTATCTTCTTCTCATATTCTTCTCATA
TCTTCTTCTCATATCTTCTTCTCATGTTAGCTCCCTGTTGGGAAATACCA
CCCATTGGGGAGTACTGTAAAATACCATAGCATTAATGTTCCCACTCCTT
TTATATATGCATTCCTTTCTGGAAAGTCCATGCTGGGCATATTCATTCTT
TCCACTTTAAAAAAGGGATTTTGAAACTCCCGGAACTAAAAAAAAATAAA
TTTTTCTGAACGGGAAAGCCCTTGAATTTTGGGATCTTACTCACCAAAAA
AAATCTGCGGGTGGGGCCCCACGGTTTTTTAAAAAAAAATTTACTCTTTT
CCAAACAAACAAGAGTTAAAAATTTCTGGGTGGGGCCCCCCGTTTCGGGA
AAAAGGTTTTTTTTTGAACATCCTCCAAAAACCCTTGGACTTTTCCGGTG
TTTAGAAAAATGATTTTCTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_l20.g1 MSMg01no304_l20.g1 CHROMAT_FILE:
MSMg01no304_l20.g1 PHD_FILE: MSMg01no304_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:47 2005
         (806 letters)



>mm_chr11_90932804_90934007
          Length = 1204

 Score = 1355 bits (701), Expect = 0.0
 Identities = 774/801 (96%), Gaps = 9/801 (1%)
 Strand = Plus / Plus

                                                                        
Query: 12   tctcttcccatacctggtctcgtatccctt-ccctcctaccactcagacccatcccttcc 70
            |||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||| |||
Sbjct: 207  tctcttcccatacctggtcttgtatcccttaccc-cctcccactcagacccatcccatcc 265

                                                                        
Query: 71   tttgcctcctgcgattattttgttcccccttctaagtgggtttgaagtatctactttttg 130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 266  tttgcctcctgcgattattttgttcccccttctaagtgggtttgaagtatctacattttg 325

                                                                        
Query: 131  atcttccttcttgttaagtttcatatggtctgagttgt-----gggtattctgagatttc 185
            |||||||||||||||||| |||||||||||||||||||     |||||||||||||||||
Sbjct: 326  atcttccttcttgttaagcttcatatggtctgagttgtattgtgggtattctgagatttc 385

                                                                        
Query: 186  aggataatatccacttatcagtgagtacataccatgtgtgttcttttgggtctgggttac 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386  aggataatatccacttatcagtgagtacataccatgtgtgttcttttgggtctgggttac 445

                                                                        
Query: 246  ctcactcagatggcatttctagtttccatccatttgtctacaacgctcacgatgtcgtca 305
            ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 446  ctcactcagatggcatttctagtttccatccatttgtctacaaagctcacaatgtcgtca 505

                                                                        
Query: 306  tttttaatagctgagaagtattccatataaagaaatacatcttttgtttatttttatttc 365
            |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 506  tttttaatagctgagaagtattccatataaagaaatatgtcttttgtttatttttatttc 565

                                                                        
Query: 366  caaaggcatgtgaagcattcgaacaaaggaatgtgaaatgttcatttaaggaaggatgca 425
            |||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 566  caaaggcatgagaagcatttgaacaaaggaatgtgaaatgttcacttaaggaaggatgca 625

                                                                        
Query: 426  gcattttctgcgctgtgtcaggtccttcttgagcatcatttgtttcctaatcagaataac 485
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 626  gcattttctgcgctgtgtcaggttcttcttgagcatcatttgtttcctaatcagaataac 685

                                                                        
Query: 486  agagacccacagagagtaaatttaaatcctgaggggttccagatgaaaaagactttcttt 545
            ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 686  agagatccacagagagtaaatttagatcctgaggtgttccagatgaaaaagactttcttt 745

                                                                        
Query: 546  gagggaaattatgctcagtggaggtgaaccaggctacccttcttgacattgcaatgagtg 605
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 746  gagggaaattatgctcagtggaggtgaacaaggctacccttcttgacattgcaatgagtg 805

                                                                        
Query: 606  agcagaaggcaatcaacaatgtatttgtagacttttactttttaattctttttttcctct 665
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 806  agcagaaggcaatcaacaatgtatttgtaggcttttactttttaattctttttttc-tct 864

                                                                        
Query: 666  tatctttgtttaaatataaaataggcatatgttttaaggatactcacatatctatgtagg 725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  tatctttgtttaaatataaaataggcatatgttttaaggatactcacatatctatgtagg 924

                                                                        
Query: 726  aaagtaaataagtgagcagtatcttcttctcatattcttctcatatcttcttctcatatc 785
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 925  aaagtaaataagtgagcagtatcttcttctcatat-cttctcatatcttcttctcatatc 983

                                 
Query: 786  ttcttctcatgttagctccct 806
            |||||||||||||||||||||
Sbjct: 984  ttcttctcatgttagctccct 1004


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 806
Length of database: 1204
Length adjustment: 10
Effective length of query: 796
Effective length of database: 1194
Effective search space:   950424
Effective search space used:   950424
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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