BAC Information

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BAC

Clone NameMSMg01-306B17
Chromosome11 (Build37)
Map Location 31,703,407 - 31,867,332
singlet/doubletdoublet
Overlap geneCpeb4, 4930524B15Rik
Upstream genePsme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream geneNsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306B17.T7 (MSMg01no306_b17.b1)MSMg01-306B17.TJ (MSMg01no306_b17.g1)
ACCAG430865AG430866
length720716
length of high quality
(start - end)		238 (127 - 364)629 (76 - 704)
definitionCHROMAT_FILE: MSMg01no306_b17.b1 PHD_FILE: MSMg01no306_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:47 2005CHROMAT_FILE: MSMg01no306_b17.g1 PHD_FILE: MSMg01no306_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,703,407 - 31,703,641)(31,866,925 - 31,867,332)
sequence
CGCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAGAGGTCACCAAGGGCTCTGGCTAAGCCTGGGTCATGTGAC
CATCTAACCTGGAAGCCATTGCCCCCGGAAGGAAAGGCCACCTTACCCTA
AGCACAAATGGGCTGTGACTAGGGGAAAGGGCTCTCTAGGGAATATGGGT
GTGTCACTCAAACCCAGGGTGGGGTGCTGGGCAAATAAGAACTTCAGGTG
TGTCCTGCAAATGATGGGCCTCTGGTGGGGAATGCTGGGAGGTCAGAGCA
GTGAGCTCCAAGCAGGCACCCTGATCTGCAGCCCCAGCTGAGGCTCCTTA
TGCCACATGAATTTTTCTCTGCACACCTGCCCGTTTTTGCAACAAGCTTC
CCAGTCTTCCGTGTCTCTGGGGCTGAGCAACTTCTGCTTAGAAATACCGC
TTGCCCTGGTCTCTGCCAGGCCCCATAGAGGCTCTCTACTCTCTCTGCAG
TCTTTCCTTTGCCTAGGCCTTCTCTGCCCAGGGCAAAGTCTGGTGACTGC
TGATGAAAAATCAAAGGCCAGCTTGCTCTTTGGATGGGGCTTTCAGCCAG
CTGTGTTGCTGCCTCCCCCTGTTCCCATGCTGTCAGGGAAAGACCAGGAC
AGCCTGGTACAGACCCCAGTCAGGCTCCAGAGACTAGCAACCCAAGAGGC
TGAGCCTAAGGTGTCAGCAG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCTGAAGATACACAGTGA
GATCCTGTCTTAAAAACAAAAACAAAAATTCCACAAATAACATACACCTG
TAAAATACATGAAAATTATGAGAATCAGTGATGGAGCTAACTACATTAGT
TAGTCAGTTAGTGAACTGATCAGTGAATTAATAGGATCTAAAATTAACAT
GAAAAAAGAATAGGCCTGAGGAAGAGAAGCCGCCCACATATAGATTCCAT
CTAGATATGTCCAAAATAGATCTATAGAGACAATGCAGACTAATACTTGC
ATAGATAGGGCTAAGATTAGTGGGTAGTAGAGGCAATGGTGAGGGGCTAT
GATGCCTTTGAAGGGGTGCAGAGTTTCTCTGTGATATTACAGTTACATTA
AAATGGAATGTTAAGGACACAACTCTGTGGATATGTAAGAACCATTAACT
TGTGTACCATAACTGGGTGAACTGGATACACTATTAATGAAAGCTCAGTA
AAATTGCTTTGAAAAGTATAGGTAAAAGGTGTTTCTCTGTGTTGTCCTGG
CTGTTCTGGAACTTGCTCTGTAGACTAGGCTGGCCTCAAACTCACAGATC
TGCCTGACTCTGACTCTTTAGTGTTGGGATTAAAAGTGTGGGCCACGACT
ACATCTTCAGATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_b17.b1 MSMg01no306_b17.b1 CHROMAT_FILE:
MSMg01no306_b17.b1 PHD_FILE: MSMg01no306_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:47 2005
         (238 letters)



>mm_chr11_31703207_31703844
          Length = 638

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaggaaaggccaccttaccctaagcacaaatgggctgtgactaggggaaagggctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaggaaaggccaccttaccctaagcacaaatgggctgtgactaggggaaagggctctc 260

                                                                       
Query: 61  tagggaatatgggtgtgtcactcaaacccagggtggggtgctgggcaaataagaacttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggaatatgggtgtgtcactcaaacccagggtggggtgctgggcaaataagaacttca 320

                                                                       
Query: 121 ggtgtgtcctgcaaatgatgggcctctggtggggaatgctgggaggtcagagcagtgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgtgtcctgcaaatgatgggcctctggtggggaatgctgggaggtcagagcagtgagc 380

                                                                  
Query: 181 tccaagcaggcaccctgatctgcagccccagctgaggctccttatgccacatgaa 235
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaagcaggcaccctgagctgcagccccagctgaggctccttatgccacatgaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no306_b17.g1 MSMg01no306_b17.g1 CHROMAT_FILE:
MSMg01no306_b17.g1 PHD_FILE: MSMg01no306_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:47 2005
         (629 letters)



>mm_chr11_31866925_31867953
          Length = 1029

 Score =  789 bits (408), Expect = 0.0
 Identities = 408/408 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagctgaagatacacagtgagatcctgtcttaaaaacaaaaacaaaaattccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 caggccagctgaagatacacagtgagatcctgtcttaaaaacaaaaacaaaaattccaca 349

                                                                       
Query: 61  aataacatacacctgtaaaatacatgaaaattatgagaatcagtgatggagctaactaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aataacatacacctgtaaaatacatgaaaattatgagaatcagtgatggagctaactaca 289

                                                                       
Query: 121 ttagttagtcagttagtgaactgatcagtgaattaataggatctaaaattaacatgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttagttagtcagttagtgaactgatcagtgaattaataggatctaaaattaacatgaaaa 229

                                                                       
Query: 181 aagaataggcctgaggaagagaagccgcccacatatagattccatctagatatgtccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aagaataggcctgaggaagagaagccgcccacatatagattccatctagatatgtccaaa 169

                                                                       
Query: 241 atagatctatagagacaatgcagactaatacttgcatagatagggctaagattagtgggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atagatctatagagacaatgcagactaatacttgcatagatagggctaagattagtgggt 109

                                                                       
Query: 301 agtagaggcaatggtgaggggctatgatgcctttgaaggggtgcagagtttctctgtgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 agtagaggcaatggtgaggggctatgatgcctttgaaggggtgcagagtttctctgtgat 49

                                                           
Query: 361 attacagttacattaaaatggaatgttaaggacacaactctgtggata 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  attacagttacattaaaatggaatgttaaggacacaactctgtggata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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