BAC Information

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BAC

Clone NameMSMg01-306E23
Chromosome11 (Build37)
Map Location 31,095,359 - 31,253,293
singlet/doubletdoublet
Overlap genenone
Upstream geneSpnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
Downstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306E23.T7 (MSMg01no306_e23.b1)MSMg01-306E23.TJ (MSMg01no306_e23.g1)
ACCAG431013AG431014
length756730
length of high quality
(start - end)		697 (47 - 743)159 (444 - 602)
definitionCHROMAT_FILE: MSMg01no306_e23.b1 PHD_FILE: MSMg01no306_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:03 2005CHROMAT_FILE: MSMg01no306_e23.g1 PHD_FILE: MSMg01no306_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,095,359 - 31,096,053)(31,253,135 - 31,253,293)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGAGCATTATGCCTACATTGTTTCCTATACCATGGAGTCAGTCT
TGGGTCTGCACTGTCAAGCTCATCTTATCCTTTTAAGATCTTGAGTTGTA
GGAAACTGCACCTTGCAGCTGTGTCCCTTTGTCTATCCTCTTGTTTGTTC
ATGCGTCTCAGAGGAGAGGTAAACCTGAAGTTTGGGCAACAGTACGATAG
GGAATACAGTATTCTGCTTCCTACAAATGAAAATCTGAGCTTGTTTTCTA
AATGACAGAACTTATTTGGAATGGTCTTGACAGATGGCTGCTTCTGTGAG
ATACTTGATGTGTGAGTTTGTGATGAAATTATGTACTTGCCTACCAGATG
ATTATATTTGCAAAGTACCTAGTAGCAACAGGTGGGCTAGGTCTTACTTT
TTCAGTTTCAATACATGTCTTGGGATTAGTCATGTTGCTCTCTGGTCTCT
TGCCTTGTAGCCAGGGGCAACACTGATTCATGCATTTAATTAGCATCTCA
TTTTGCTGTCTGTCTTCCTGTTTCTGTCTGTTTCTGTCTATTTCTTTCTC
ATGTTCTCTCCCCAACCCCTTCCATTCCAGATGCTTGATCCTCCTGTCTT
GAGAGTACAGGANACTAAGATGACACTGGGTGGTGAGCAGAGAAACCAGA
GCCCTGACCACTGGAGTAGTATACTGTCTCATAGGCTCTAAGCTATTTGC
CTGACA

CCCGGCGGNCGGCTGGCCTACGGGACCCGCCGAANNANAGAAGGACTGAC
CGNCACCGCGGAGAGAGCAGCCNNANNCCNCCAGCCNNANNNCNNCCAAG
GTTTTCACCANCGGAAGGCGGAGGCCNAAAGCNCAGAGCACCGGNCGGAC
AAGCGGGCCCNNCCNNCNGNGCNGNCCNAAGGNCNACNNNCNGACCNACN
CNCCANNCNCAAAGGNNGACGACAAAGNCNNNGAGGGACTTTTTGAAGGG
GCAGTGTACACAGTGGGAAGTCACTGAAAGTGGACGTGGAGGTTGAGGAC
TTACTTTTTTTTTTTCTAACCGGGNCCCAGGCCCACGCNAAGGCAAGAAG
TTATTTTCGCACCCCCCCCCCCCCTGCTGGGCATTCACAGGCCACTGAGG
AGATTTTTGGCAGCTCAAAAAAAGAAAGAGAGCCCTTGGGGAGAGTGAAG
TCTTCCTGCCAGACCCTCCCTGAAAACCTCAAGACAGGGTCCAGCCCACA
GAGCTGAAACCAGCAAAGACTGCAGGAGAGAGATTAGGGTTAGGACCCAC
TTTGCTCTGGGGCAAGGCTCCTAAGAGTTTGACATTTGAAAAAGATCTGG
CCTGGAGGAGTCAAGGATTTGGGGCAGGGCTCCTTCTGGCTCTTGGTATT
TTTTTTAGAGGAAGAAATGGACAGAAAGTAATTTTTAAAGCAAACTCTTG
AAGCACAATGGTACAAACATAATCATGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_e23.b1 MSMg01no306_e23.b1 CHROMAT_FILE:
MSMg01no306_e23.b1 PHD_FILE: MSMg01no306_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:03 2005
         (697 letters)



>mm_chr11_31095157_31096253
          Length = 1097

 Score = 1323 bits (684), Expect = 0.0
 Identities = 692/695 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttgagcattatgcctacattgtttcctataccatggagtcagtcttgggtctg 62
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttgagcattatgtatacattgtttcctataccatggagtcagtcttgggtctg 262

                                                                       
Query: 63  cactgtcaagctcatcttatccttttaagatcttgagttgtaggaaactgcaccttgcag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactgtcaagctcatcttatccttttaagatcttgagttgtaggaaactgcaccttgcag 322

                                                                       
Query: 123 ctgtgtccctttgtctatcctcttgtttgttcatgcgtctcagaggagaggtaaacctga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgtgtccctttgtctatcctcttgtttgttcatgcgtctcagaggagaggtaaacctga 382

                                                                       
Query: 183 agtttgggcaacagtacgatagggaatacagtattctgcttcctacaaatgaaaatctga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtttgggcaacagtacgatagggaatacagtattctgcttcctacaaatgaaaatctga 442

                                                                       
Query: 243 gcttgttttctaaatgacagaacttatttggaatggtcttgacagatggctgcttctgtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcttgttttctaaatgacagaacttatttggaatggtcttgacagatggctgcttctgtg 502

                                                                       
Query: 303 agatacttgatgtgtgagtttgtgatgaaattatgtacttgcctaccagatgattatatt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agatacttgatgtgtgagtttgtgatgaaattatgtacttgcctaccagatgattatatt 562

                                                                       
Query: 363 tgcaaagtacctagtagcaacaggtgggctaggtcttactttttcagtttcaatacatgt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcaaagtacctagtagcaacaggtgggctaggtcttactttttcagtttcaatacatgt 622

                                                                       
Query: 423 cttgggattagtcatgttgctctctggtctcttgccttgtagccaggggcaacactgatt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttgggattagtcatgttgctctctggtctcttgccttgtagccaggggcaacactgatt 682

                                                                       
Query: 483 catgcatttaattagcatctcattttgctgtctgtcttcctgtttctgtctgtttctgtc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catgcatttaattagcatctcattttgctgtctgtcttcctgtttctgtctgtttctgtc 742

                                                                       
Query: 543 tatttctttctcatgttctctccccaaccccttccattccagatgcttgatcctcctgtc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tatttctttctcatgttctctccccaaccccttccattccagatgcttgatcctcctgtc 802

                                                                       
Query: 603 ttgagagtacagganactaagatgacactgggtggtgagcagagaaaccagagccctgac 662
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttgagagtacaggaaactaagatgacactgggtggtgagcagagaaaccagagccctgac 862

                                              
Query: 663 cactggagtagtatactgtctcataggctctaagc 697
           |||||||||||||||||||||||||||||||||||
Sbjct: 863 cactggagtagtatactgtctcataggctctaagc 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no306_e23.g1 MSMg01no306_e23.g1 CHROMAT_FILE:
MSMg01no306_e23.g1 PHD_FILE: MSMg01no306_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:03 2005
         (159 letters)



>mm_chr11_31252935_31253493
          Length = 559

 Score =  300 bits (155), Expect = 3e-86
 Identities = 158/159 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaagtcttcctgccagaccctccctgaaaacctcaagacagggtccagcccacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agtgaagtcttcctgccagaccctccctgaaaacctcaagacagggtccagcccacagag 300

                                                                       
Query: 61  ctgaaaccagcaaagactgcaggagagagattagggttaggacccactttgctctggggc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctgaaaccagcaaagactggaggagagagattagggttaggacccactttgctctggggc 240

                                                  
Query: 121 aaggctcctaagagtttgacatttgaaaaagatctggcc 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaggctcctaagagtttgacatttgaaaaagatctggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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