CATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAAGAGCGCGGAAT
TCTCTTATCTCTCACTACAAGTGTTGGGTTACACACATACACCATGCCTG
GCTCATGTGGATGCTAGAGATAACTCCTTACACAGTAAGCAGTTTATCTA
CTGAACCATCTCCCCAGCCCAAGAATGCATACTTTTAAAGATATATTTTA
TTTTTAATTGTGTGTATATGTCTGTATTCATGGGTATGTGCACATGAGGG
CAGGTGCCAATGGAGACCAGAAGAGGGCGTCAGATACTTTAAAGGTGGAG
TTATAGGTAGTTGTCAGCTGTCTGACTTGGGTACAGGAACTAGACTCTGG
TCCTTGAGAAAAGTAGTGAGTTCTCTTAGCCAATGAGCCCTCTCTCCAGC
AACCCCAATATGCTTCTACAGGTCACAAATAAAGAATATGAATGAAATAG
ATATAATAATTATATAATATATGTACACATATATGTATATGTATATATGT
ATATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGA
TCTCATTATTATATCTTATTCCATTCTTACCCGTTTAATTAACCCCCCAT
TTTCTTTCTCTTTTTTTCTTTTTTTACTCATTTTATCCTTTTTATAATCC
CCCCCCTCTCTTTTTTTCTCTCTTTTCCCCCCCCTCCGCTTTTTCTTTTT
TATTCCCCTTTATTTTTTCTTTTCCTGCCCTCTTTTTATTTTCTCG

ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAATTATTTTCCACCTAAATAATG
ACACATCACAGTCTTAAAAAGAGTATTAACTGGCTAGAGAGATGGCTCCC
TGATTAATAGCACATACTCTTCTTGAGGAGTCCCTAGGTTCAGCACCCAG
CACCAACACAGAAGCTCACAACTGCCTATAACTCTGGTTCCAGGAGATCT
GACAATATTCCATATAAATTAAAAATAAATCTCTTGAAAAATATACAATG
ACAGAATAGACAGACAGAGACAGACAAGAGAGACAGGCTGACTAAACAGA
TTCCTGGTTTTAAGCTGTTAGCATATGCCTATAATCCCAGCATACATACA
CACACACACACACACACACACCCTGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGCAAGCAATGTGTACATATGTCCGACAGCACTAAGGATAAGAAAAG
CTGTCTCAGACACTAAGGTGCATGGAAAGTGCCAAATCCATTTGGTATTC
ACCGGGATTTAGGGCCAATACCATGTAGAAACTAAGGGAATGACTCTTGG
GTCTTTGGTTTTTGTTCTGCTTTTGTTTTTTTATGGGTGTGTGTGTGTAT
GTGTGTGTGTCTGTGTTTCTGTTTAGGAGATGCCACCTATGTGTGAGTGC
TTTCAGAAGCCAGAATAGGTGTCAGATTCTCTGAAA

Query= MSMg01no307_d12.g1 MSMg01no307_d12.g1 CHROMAT_FILE:
MSMg01no307_d12.g1 PHD_FILE: MSMg01no307_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:13 2005
         (662 letters)



>mm_chr11_23255546_23256607
          Length = 1062

 Score = 1156 bits (598), Expect = 0.0
 Identities = 648/684 (94%), Gaps = 32/684 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaattattttccacctaaataatgacacatcacagtcttaaaaagagtattaactggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 attaattattttccacctaaataatgacacatcacagtcttaaaaagagtattaactggc 636

                                                                       
Query: 61  tagagagatggctccctgattaatagcacatactcttcttgaggagtccctaggttcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 635 tagagagatggctccctgattaatagcacatactcttcttgaggagtgcctaggttcagc 576

                                                                       
Query: 121 acccagcaccaacacagaagctcacaactgcctataactctggttccaggagatctgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 acccagcaccaacacagaagctcacaactgcctataactctggttccaggagatctgaca 516

                                                                       
Query: 181 atattccatataaattaaaaataaatctcttgaaaaatatacaatgacagaatagacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atattccatataaattaaaaataaatctcttgaaaaatatacaatgacagaatagacaga 456

                                                                       
Query: 241 cagagacagacaagagagacaggctgactaaacagattcctggttttaagctgttagcat 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 455 cagagacagacaagagagacaggctgactaaacagattcttggttttaagctgttagcat 396

                                                                       
Query: 301 atgcctataatcccagcatacatacacacacacacacacacacacaccctgagagagaga 360
           |||||||||||||||||||||||||||||||||||||||||||||||          | |
Sbjct: 395 atgcctataatcccagcatacatacacacacacacacacacacacac----------aca 346

                                                                       
Query: 361 gagag--agagagagagagagagcaagcaatgtgtacatatgtccgacagcactaaggat 418
            ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagagccagagagagagagagagcaagcaatgtgtacatatgtccgacagcactaaggat 286

                                                                       
Query: 419 aagaaaagctgtctcagacactaaggtgcatggaaagtgccaaatccatttggtattcac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aagaaaagctgtctcagacactaaggtgcatggaaagtgccaaatccatttggtattcac 226

                                                                       
Query: 479 cgggatttagggccaataccatgtagaaactaagggaatgactcttgggtctttggtttt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cgggatttagggccaataccatgtagaaactaagggaatgactcttgggtctttggtttt 166

                                                                       
Query: 539 tgttctgcttttgtttttttatgggtg--------------------tgtgtgtgtatgt 578
           |||||||||||||||||||||||||||                    |||||||||||||
Sbjct: 165 tgttctgcttttgtttttttatgggtgtgtgtgtgtatgtgtgtgtatgtgtgtgtatgt 106

                                                                       
Query: 579 gtgtgtgtctgtgtttctgtttaggagatgccacctatgtgtgagtgctttcagaagcca 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtgtgtgtctgtgtttctgtttaggagatgccacctatgtgtgagtgctttcagaagcca 46

                                   
Query: 639 gaataggtgtcagattctctgaaa 662
           ||||||||||||||||||||||||
Sbjct: 45  gaataggtgtcagattctctgaaa 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)