Query= MSMg01no307_d24.b1 MSMg01no307_d24.b1 CHROMAT_FILE:
MSMg01no307_d24.b1 PHD_FILE: MSMg01no307_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:15 2005
(702 letters)
>mm_chr11_88320238_88321339
Length = 1102
Score = 1350 bits (698), Expect = 0.0
Identities = 701/702 (99%)
Strand = Plus / Plus
Query: 1 ctcaagagaggtccaggaattctcactctgggccccattatctctaaccagacattcaga 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaagagaggtccaggaattctcattctgggccccattatctctaaccagacattcaga 260
Query: 61 aaaactcagggctagttaaagcacagccttggaacacagactctagtctcaaagcctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaactcagggctagttaaagcacagccttggaacacagactctagtctcaaagcctgtc 320
Query: 121 ttcttgatttcttgggcatatgaccttgtgtgaggcactgcctgtaagttctctctatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttgatttcttgggcatatgaccttgtgtgaggcactgcctgtaagttctctctatag 380
Query: 181 gagcacagaaggaaggcatgtaaatctgtgtctgcttcccaccacatggcagtggccagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcacagaaggaaggcatgtaaatctgtgtctgcttcccaccacatggcagtggccagg 440
Query: 241 caagggctattcccttccatggctttcttttagtttggacttttatgagacagggtctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagggctattcccttccatggctttcttttagtttggacttttatgagacagggtctca 500
Query: 301 tgctgcaccccaggctggtctggaactcattatgcaaactggtctcccatctcagcctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgcaccccaggctggtctggaactcattatgcaaactggtctcccatctcagcctct 560
Query: 361 ccttggctttgaaggaggagcaatttgaaaatctttttaaaacgccccaatgtgacagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttggctttgaaggaggagcaatttgaaaatctttttaaaacgccccaatgtgacagct 620
Query: 421 gctcagaagataaatttgacagggggaaaaaaaagctacattaaaaagggtccaggagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcagaagataaatttgacagggggaaaaaaaagctacattaaaaagggtccaggagct 680
Query: 481 ggagagatgggtcccagttaagagcgctgactgctcttccagaggatctgggttgaattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagagatgggtcccagttaagagcgctgactgctcttccagaggatctgggttgaattc 740
Query: 541 ccagcagccacatggcagctcagaactgtccgtaactataagatctgacaccatcactga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagcagccacatggcagctcagaactgtccgtaactataagatctgacaccatcactga 800
Query: 601 catacatgcaggcaaaacaccagtgcacattaaaaaaacaataacaacaacaacaaacaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catacatgcaggcaaaacaccagtgcacattaaaaaaacaataacaacaacaacaaacaa 860
Query: 661 acaaacaaaaaaggaacacttccaaccatgtttcttggagtt 702
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acaaacaaaaaaggaacacttccaaccatgtttcttggagtt 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no307_d24.g1 MSMg01no307_d24.g1 CHROMAT_FILE:
MSMg01no307_d24.g1 PHD_FILE: MSMg01no307_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:15 2005
(664 letters)
>mm_chr11_88352727_88353790
Length = 1064
Score = 1077 bits (557), Expect = 0.0
Identities = 582/603 (96%), Gaps = 20/603 (3%)
Strand = Plus / Minus
Query: 82 ttaagggccactggcggatttgagtccagtctcagtgctggttgtttggctgcgtcaccc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 ttaagggccactggcggatttgagtccagtctcagtgctggttgtttggctgcgtcaccc 1005
Query: 142 agaagaatgcctgcctcattgtaagagctagagagaagtttcccagaggccagctatgct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 agaagaatgcctgcctcattgtaagagctagagagaagtttcccagaggccagctatgct 945
Query: 202 attcaggctgtgtgtc--------------------tgtgtgtgtgtgtgtgtgtgtgtg 241
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 944 attcaggctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 885
Query: 242 tgtgtgtgtgtgtgtgtgtgcttcttcctgtttaatgagtaggaagaaaacttctgagta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tgtgtgtgtgtgtgtgtgtgcttcttcctgtttaatgagtaggaagaaaacttctgagta 825
Query: 302 gagcttgagtttgaggtggatctttggtacagaagttaaactggcatgtttggggacttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gagcttgagtttgaggtggatctttggtacagaagttaaactggcatgtttggggacttt 765
Query: 362 ctcacaaatgtccttgtgacatttaacaaatgacctttgtgctaaaattgaggccctgtc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ctcacaaatgtccttgtgacatttaacaaatgacctttgtgctaaaattgaggccctgtc 705
Query: 422 agggtgctcactgcagtgatttttgagaagggaccagaaggagtgaggtataagaaggtg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agggtgctcactgcagtgatttttgagaagggaccagaaggagtgaggtataagaaggtg 645
Query: 482 aaggacacaatgcatgactgttgaccaaggtcagagcattttagcaaaagggcatggagc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaggacacaatgcatgactgttgaccaaggtcagagcattttagcaaaagggcatggagc 585
Query: 542 ggcctggagacaggatgagacgtgagtgagttgtctggcgcttttgagtccttgttgtca 601
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 584 ggcctggagacaggatgagacgtgagtgagttgtctggggcttttgagtccttgttgtca 525
Query: 602 caataatttagtgtcctcaggccctgactcctgtcttcagattccttgaagctaacctaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caataatttagtgtcctcaggccctgactcctgtcttcagattccttgaagctaacctaa 465
Query: 662 gca 664
|||
Sbjct: 464 gca 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 28
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
