BAC Information

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BAC

Clone NameMSMg01-307H04
Chromosome11 (Build37)
Map Location 121,467,318 - 121,467,844
singlet/doubletsinglet
Overlap geneTbcd
Upstream geneAnapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Zfp750
Downstream geneB3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307H04.T7 (MSMg01no307_h04.b1)MSMg01-307H04.TJ (MSMg01no307_h04.g1)
ACCAG431809AG431810
length594728
length of high quality
(start - end)
---527 (71 - 597)
definitionCHROMAT_FILE: MSMg01no307_h04.b1 PHD_FILE: MSMg01no307_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:30 2005CHROMAT_FILE: MSMg01no307_h04.g1 PHD_FILE: MSMg01no307_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTGNNTTNNNCCCTTTTATCATTTTGAGGCCTTCGGGGCCCCC
CTTAACCCNCNNCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTG
CAAAAGGACCGCGGAATTCAATATTCCCAGAGTAAGTAATAATGTANACT
ACAAAACTCCTAAAAGAGAGCATAGAAAACCCATATGACCTTGGTTGGGG
ATTTTTAGTGAATTTTTTTTTTTTTTAAAATCAACCCCAATAACCATGGA
CCCAACCCCATTAAAAAAATTAAAAAACTTAATTCCTGGGGAAAGGCTTA
TTTATTAAAAAAAATTTTTTTTGGGAAAAAAAAAAAAAAAAAATCCCACA
AAAAATTTTCCCGGGAGAAAAAAAACTCTCTCCCCCCAAAAAAAATGGTT
TTTTGTTTTCCCCCAAAAAAAAAAAATTTTTTTCTCCCTCATTTTTTTTT
TAAAGTGGGGGGGAAAAAAAAAGTGGTTATTTTCCCCCTTTTTTTTCTTT
CTCCTAATAAAAAAAAATAATTTTTTTGTGGGGGGGTTTCCCCCCCCCCC
ACAAAAATGAATTTTTTTTTCTTCAAAAAAAAAAAAAAAAAAAG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCTTGATTTGGACAGCTTTGTATTTCAT
GAAGATGTGTGAGCATCTACTGTTGCTTAGAAACTCCCTGGTGGTTTTGG
ATCTTGCTTTATACTGACTGGTGGATTCAGATCAAGAGGATCTCAGTTGA
TGTCCTCCCTCTCTGAGTCTTTGCCCACTCCAGTTTGCCCCATTAAGAGG
ATCTATGCCTAGTTTTCATAGGATCTTGTATGGGGTTTTGGTGTGGTTTT
CTCCCTTGATCTTGAGCCTCGTCTTTGTGCTTACTGCTGACCAGCATTCA
GGTGAAGCCCTAAGGCCAGGCGCTCCACTGTCTCTGCGCTCTGCCTTGAG
ATCCTGCATGCCCCACACACCCAGGGTTGCTGGAGGGGACCAGCTTGCTT
TGCTTGAAGTCTGTAGTGTCTTTGTTGTTTAACTGTCTGTCTTTGCTGGA
TGCTGAAGATGGCGTTTCACCTGACACTACAGGGCTCCCTCTGACACTGT
GTAGCACTGACTTTCTAAAACCTTCCCGGGTAGCTTGAACACTCACAGGG
GCATGGCCCGGCTAGGATGCTCTTCTCCACACCGATGGATTCATCTAGGA
AAATGCTCTAAGGATTTGACATCTATTTTTCTGGCTTACAAATTTCAAAA
TAAGATAGTAGGAAAATAATGATATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_h04.g1 MSMg01no307_h04.g1 CHROMAT_FILE:
MSMg01no307_h04.g1 PHD_FILE: MSMg01no307_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:30 2005
         (527 letters)



>mm_chr11_121467118_121468044
          Length = 927

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcttgatttggacagctttgtatttcatgaagatgtgtgagcatctactgttgcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttgatttggacagctttgtatttcatgaagatgtgtgagcatctactgttgcttag 260

                                                                       
Query: 61  aaactccctggtggttttggatcttgctttatactgactggtggattcagatcaagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactccctggtggttttggatcttgctttatactgactggtggattcagatcaagagga 320

                                                                       
Query: 121 tctcagttgatgtcctccctctctgagtctttgcccactccagtttgccccattaagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcagttgatgtcctccctctctgagtctttgcccactccagtttgccccattaagagg 380

                                                                       
Query: 181 atctatgcctagttttcataggatcttgtatggggttttggtgtggttttctcccttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctatgcctagttttcataggatcttgtatggggttttggtgtggttttctcccttgat 440

                                                                       
Query: 241 cttgagcctcgtctttgtgcttactgctgaccagcattcaggtgaagccctaaggccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgagcctcgtctttgtgcttactgctgaccagcattcaggtgaagccctaaggccagg 500

                                                                       
Query: 301 cgctccactgtctctgcgctctgccttgagatcctgcatgccccacacacccagggttgc 360
           |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||
Sbjct: 501 cgctccactgtctctgcgctctgccttgagatcctgcatgcatcacacacccagggctgc 560

                                                                       
Query: 361 tggaggggaccagcttgctttgcttgaagtctgtagtgtctttgttgtttaactgtctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaggggaccagcttgctttgcttgaagtctgtagtgtctttgttgtttaactgtctgt 620

                                                                       
Query: 421 ctttgctggatgctgaagatggcgtttcacctgacactacagggctccctctgacactgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgctggatgctgaagatggcgtttcacctgacactacagggctccctctgacactgt 680

                                                          
Query: 481 gtagcactgactttctaaaaccttcccgggtagcttgaacactcaca 527
           ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtagcactgcctttctaaaaccttcccgggtagcttgaacactcaca 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)